Hb_000152_820

Information

Type -
Description -
Location Contig152: 651660-656458
Sequence    

Annotation

kegg
ID rcu:RCOM_1500660
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090764.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
swissprot
ID Q9FMF6
description Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1
trembl
ID A0A067JSA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13059: 653315-653472 , PASA_asmbl_13060: 653496-653629 , PASA_asmbl_13061: 654500-655411 , PASA_asmbl_13062: 654585-655063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_820 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
2 Hb_010175_020 0.0492421833 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000317_020 0.050247729 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
4 Hb_007757_110 0.0623463671 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
5 Hb_001736_040 0.0630253984 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_000776_110 0.0684647034 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
7 Hb_001269_550 0.0696291334 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
8 Hb_002307_100 0.0698012458 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
9 Hb_175338_030 0.0698970464 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
10 Hb_004600_040 0.0727798955 - - -
11 Hb_001720_050 0.0730407542 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
12 Hb_002039_010 0.0736267415 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
13 Hb_000421_260 0.0743483474 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
14 Hb_002496_030 0.0744001211 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
15 Hb_000062_240 0.0755263406 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
16 Hb_001975_160 0.0764143681 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002026_100 0.0764933376 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
18 Hb_000977_070 0.0768508699 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
19 Hb_000661_050 0.0774666342 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
20 Hb_004837_040 0.0782144235 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]

Gene co-expression network

sample Hb_000152_820 Hb_000152_820 Hb_010175_020 Hb_010175_020 Hb_000152_820--Hb_010175_020 Hb_000317_020 Hb_000317_020 Hb_000152_820--Hb_000317_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_010175_020--Hb_007757_110 Hb_175338_030 Hb_175338_030 Hb_010175_020--Hb_175338_030 Hb_002307_100 Hb_002307_100 Hb_010175_020--Hb_002307_100 Hb_010175_020--Hb_000317_020 Hb_000413_180 Hb_000413_180 Hb_010175_020--Hb_000413_180 Hb_000317_020--Hb_001736_040 Hb_002876_110 Hb_002876_110 Hb_000317_020--Hb_002876_110 Hb_001975_160 Hb_001975_160 Hb_000317_020--Hb_001975_160 Hb_000661_050 Hb_000661_050 Hb_000317_020--Hb_000661_050 Hb_004600_040 Hb_004600_040 Hb_000317_020--Hb_004600_040 Hb_007757_110--Hb_002307_100 Hb_001584_150 Hb_001584_150 Hb_007757_110--Hb_001584_150 Hb_007757_110--Hb_175338_030 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_000827_070 Hb_000827_070 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070 Hb_000776_110--Hb_001269_550 Hb_001159_100 Hb_001159_100 Hb_000776_110--Hb_001159_100 Hb_000776_110--Hb_001975_160 Hb_002039_010 Hb_002039_010 Hb_000776_110--Hb_002039_010 Hb_000776_110--Hb_000317_020 Hb_002496_030 Hb_002496_030 Hb_001269_550--Hb_002496_030 Hb_019654_190 Hb_019654_190 Hb_001269_550--Hb_019654_190 Hb_006400_060 Hb_006400_060 Hb_001269_550--Hb_006400_060 Hb_002016_110 Hb_002016_110 Hb_001269_550--Hb_002016_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41614 4.91194 1.63572 2.02108 8.90634 8.3718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3436 5.88655 8.82666 4.67891 2.80662

CAGE analysis