Hb_000152_880

Information

Type -
Description -
Location Contig152: 700982-701666
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_880 0.0 - - -
2 Hb_000017_140 0.0664062536 - - polygalacturonase, putative [Ricinus communis]
3 Hb_007101_140 0.074994901 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
4 Hb_007894_080 0.0750181538 - - conserved hypothetical protein [Ricinus communis]
5 Hb_033772_060 0.0811558437 - - conserved hypothetical protein [Ricinus communis]
6 Hb_029639_030 0.0820879897 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
7 Hb_027506_030 0.0956479411 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
8 Hb_010264_020 0.1008326012 - - unnamed protein product [Vitis vinifera]
9 Hb_000181_220 0.1053934359 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
10 Hb_004162_140 0.1077963311 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
11 Hb_003894_180 0.1081263734 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
12 Hb_004804_010 0.1101503183 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
13 Hb_007370_010 0.1169232078 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
14 Hb_093218_010 0.1175733291 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
15 Hb_000303_060 0.1188513447 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_000977_030 0.1220095917 - - unnamed protein product [Vitis vinifera]
17 Hb_001405_040 0.1254480748 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
18 Hb_009767_060 0.1261786925 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
19 Hb_009456_010 0.1268757986 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
20 Hb_000639_010 0.1277503346 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_880 Hb_000152_880 Hb_000017_140 Hb_000017_140 Hb_000152_880--Hb_000017_140 Hb_007101_140 Hb_007101_140 Hb_000152_880--Hb_007101_140 Hb_007894_080 Hb_007894_080 Hb_000152_880--Hb_007894_080 Hb_033772_060 Hb_033772_060 Hb_000152_880--Hb_033772_060 Hb_029639_030 Hb_029639_030 Hb_000152_880--Hb_029639_030 Hb_027506_030 Hb_027506_030 Hb_000152_880--Hb_027506_030 Hb_000017_140--Hb_007894_080 Hb_000017_140--Hb_007101_140 Hb_010264_010 Hb_010264_010 Hb_000017_140--Hb_010264_010 Hb_004466_090 Hb_004466_090 Hb_000017_140--Hb_004466_090 Hb_004804_010 Hb_004804_010 Hb_000017_140--Hb_004804_010 Hb_007101_140--Hb_007894_080 Hb_007101_140--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_007101_140--Hb_000181_220 Hb_004162_140 Hb_004162_140 Hb_007101_140--Hb_004162_140 Hb_007894_080--Hb_033772_060 Hb_007894_080--Hb_029639_030 Hb_000162_200 Hb_000162_200 Hb_007894_080--Hb_000162_200 Hb_033772_060--Hb_029639_030 Hb_033772_060--Hb_000181_220 Hb_093218_010 Hb_093218_010 Hb_033772_060--Hb_093218_010 Hb_005892_040 Hb_005892_040 Hb_033772_060--Hb_005892_040 Hb_029639_030--Hb_000181_220 Hb_029639_030--Hb_005892_040 Hb_000977_030 Hb_000977_030 Hb_029639_030--Hb_000977_030 Hb_085962_010 Hb_085962_010 Hb_027506_030--Hb_085962_010 Hb_027506_030--Hb_004804_010 Hb_001396_030 Hb_001396_030 Hb_027506_030--Hb_001396_030 Hb_010264_020 Hb_010264_020 Hb_027506_030--Hb_010264_020 Hb_000303_060 Hb_000303_060 Hb_027506_030--Hb_000303_060 Hb_032572_010 Hb_032572_010 Hb_027506_030--Hb_032572_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0444378 0.2897 0.523352 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.197271 0.361441

CAGE analysis