Hb_000153_040

Information

Type -
Description -
Location Contig153: 72701-73243
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000153_040 0.0 - - -
2 Hb_003494_260 0.0465828556 - - -
3 Hb_000345_480 0.0587714436 - - cyclin-dependent protein kinase, putative [Ricinus communis]
4 Hb_132629_010 0.0995814303 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_075570_010 0.1180620463 - - -
6 Hb_013983_010 0.1267932164 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
7 Hb_000007_310 0.1345281736 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
8 Hb_000153_020 0.1392713988 - - conserved hypothetical protein [Ricinus communis]
9 Hb_177627_010 0.1581485459 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_156144_020 0.1755367612 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
11 Hb_001125_030 0.1768853831 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029866_010 0.1820394464 - - -
13 Hb_001892_160 0.185166892 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
14 Hb_000094_390 0.1854853437 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
15 Hb_001178_120 0.1863034109 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
16 Hb_158990_010 0.2037526546 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_081636_010 0.2205785801 - - -
18 Hb_005539_320 0.2212280196 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
19 Hb_001741_100 0.2222490154 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
20 Hb_001604_110 0.2285571584 - - -

Gene co-expression network

sample Hb_000153_040 Hb_000153_040 Hb_003494_260 Hb_003494_260 Hb_000153_040--Hb_003494_260 Hb_000345_480 Hb_000345_480 Hb_000153_040--Hb_000345_480 Hb_132629_010 Hb_132629_010 Hb_000153_040--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_000153_040--Hb_075570_010 Hb_013983_010 Hb_013983_010 Hb_000153_040--Hb_013983_010 Hb_000007_310 Hb_000007_310 Hb_000153_040--Hb_000007_310 Hb_003494_260--Hb_000345_480 Hb_003494_260--Hb_132629_010 Hb_003494_260--Hb_075570_010 Hb_003494_260--Hb_000007_310 Hb_003494_260--Hb_013983_010 Hb_000345_480--Hb_013983_010 Hb_000345_480--Hb_075570_010 Hb_000345_480--Hb_132629_010 Hb_029866_010 Hb_029866_010 Hb_000345_480--Hb_029866_010 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_000007_310 Hb_177627_010 Hb_177627_010 Hb_132629_010--Hb_177627_010 Hb_000153_020 Hb_000153_020 Hb_132629_010--Hb_000153_020 Hb_075570_010--Hb_000007_310 Hb_075570_010--Hb_177627_010 Hb_013983_010--Hb_029866_010 Hb_001125_030 Hb_001125_030 Hb_013983_010--Hb_001125_030 Hb_081636_010 Hb_081636_010 Hb_013983_010--Hb_081636_010 Hb_000007_310--Hb_177627_010 Hb_000007_310--Hb_000153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.388924 0 0 0 0.42028 0.199585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis