Hb_000154_080

Information

Type transcription factor
Description TF Family: bZIP
Location Contig154: 148804-153644
Sequence    

Annotation

kegg
ID rcu:RCOM_0454610
description Transcription factor RF2a, putative
nr
ID XP_012065205.1
description PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
swissprot
ID Q04088
description Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1
trembl
ID A0A067LI27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20894 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable transcription factor 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13248: 148863-153909
cDNA
(Sanger)
(ID:Location)		 007_C07.ab1: 153202-153909 , 012_E24.ab1: 153205-153909 , 024_P18.ab1: 153245-153909

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000154_080 0.0 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
2 Hb_003878_190 0.0746020053 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
3 Hb_003551_020 0.0753556744 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
4 Hb_002685_190 0.0820662057 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
5 Hb_015978_060 0.0827456951 - - unnamed protein product [Vitis vinifera]
6 Hb_000007_100 0.0889423578 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
7 Hb_001221_410 0.0899572875 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
8 Hb_000720_120 0.0900291235 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
9 Hb_002105_090 0.0914253793 - - Rab4 [Hevea brasiliensis]
10 Hb_001138_050 0.0929898795 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
11 Hb_005690_010 0.093616668 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
12 Hb_070986_010 0.0937573511 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
13 Hb_000661_250 0.0944401646 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
14 Hb_003001_060 0.0950939189 - - wound-responsive family protein [Populus trichocarpa]
15 Hb_000392_270 0.0956424418 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
16 Hb_001824_070 0.0956474146 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
17 Hb_004645_050 0.0961539065 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
18 Hb_001951_140 0.0962879335 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
19 Hb_026198_050 0.0967433319 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
20 Hb_000160_170 0.0974390632 - - hypothetical protein JCGZ_02506 [Jatropha curcas]

Gene co-expression network

sample Hb_000154_080 Hb_000154_080 Hb_003878_190 Hb_003878_190 Hb_000154_080--Hb_003878_190 Hb_003551_020 Hb_003551_020 Hb_000154_080--Hb_003551_020 Hb_002685_190 Hb_002685_190 Hb_000154_080--Hb_002685_190 Hb_015978_060 Hb_015978_060 Hb_000154_080--Hb_015978_060 Hb_000007_100 Hb_000007_100 Hb_000154_080--Hb_000007_100 Hb_001221_410 Hb_001221_410 Hb_000154_080--Hb_001221_410 Hb_003001_060 Hb_003001_060 Hb_003878_190--Hb_003001_060 Hb_001824_070 Hb_001824_070 Hb_003878_190--Hb_001824_070 Hb_000392_270 Hb_000392_270 Hb_003878_190--Hb_000392_270 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_009711_030 Hb_009711_030 Hb_003878_190--Hb_009711_030 Hb_000977_080 Hb_000977_080 Hb_003878_190--Hb_000977_080 Hb_000019_230 Hb_000019_230 Hb_003551_020--Hb_000019_230 Hb_003551_020--Hb_000977_080 Hb_000045_130 Hb_000045_130 Hb_003551_020--Hb_000045_130 Hb_003551_020--Hb_000392_270 Hb_003551_020--Hb_003878_190 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_009954_040 Hb_009954_040 Hb_002685_190--Hb_009954_040 Hb_001278_110 Hb_001278_110 Hb_002685_190--Hb_001278_110 Hb_000661_250 Hb_000661_250 Hb_015978_060--Hb_000661_250 Hb_005618_160 Hb_005618_160 Hb_015978_060--Hb_005618_160 Hb_001259_090 Hb_001259_090 Hb_015978_060--Hb_001259_090 Hb_000300_060 Hb_000300_060 Hb_015978_060--Hb_000300_060 Hb_000808_040 Hb_000808_040 Hb_015978_060--Hb_000808_040 Hb_000926_300 Hb_000926_300 Hb_000007_100--Hb_000926_300 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_002284_240 Hb_002284_240 Hb_000007_100--Hb_002284_240 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_000007_100--Hb_003599_040 Hb_007254_040 Hb_007254_040 Hb_001221_410--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_001221_410--Hb_032717_080 Hb_002105_090 Hb_002105_090 Hb_001221_410--Hb_002105_090 Hb_000169_010 Hb_000169_010 Hb_001221_410--Hb_000169_010 Hb_001135_050 Hb_001135_050 Hb_001221_410--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001221_410--Hb_001246_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7176 15.6996 8.84116 13.1669 39.415 30.9004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.055 52.3312 18.2511 14.3766 9.19434

CAGE analysis