Hb_000155_040

Information

Type -
Description -
Location Contig155: 102550-106468
Sequence    

Annotation

kegg
ID rcu:RCOM_1673170
description protein with unknown function (EC:2.7.11.30 1.3.1.74)
nr
ID XP_012092411.1
description PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
swissprot
ID Q9SGP2
description Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
trembl
ID A0A067JNC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21485 PE=3 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13424: 103093-106353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_040 0.0 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
2 Hb_002448_020 0.1226968435 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
3 Hb_012743_020 0.1310515694 - - serine/threonine protein phosphatase, putative [Ricinus communis]
4 Hb_002307_010 0.1313255348 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
5 Hb_000347_420 0.1323240675 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
6 Hb_172633_020 0.1328229238 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
7 Hb_001114_120 0.1370815632 - - protein with unknown function [Ricinus communis]
8 Hb_003640_010 0.1379501599 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
9 Hb_007943_020 0.1389915425 - - transcription factor, putative [Ricinus communis]
10 Hb_002042_160 0.1393766742 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
11 Hb_138606_020 0.14100433 - - Nitrate transporter2.5 [Theobroma cacao]
12 Hb_029260_010 0.141438644 - - nitrate transporter, putative [Ricinus communis]
13 Hb_000215_250 0.1418282831 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
14 Hb_078361_010 0.1423374518 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
15 Hb_000834_040 0.1431470219 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
16 Hb_000317_220 0.1432490717 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001607_070 0.144371896 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
18 Hb_005357_020 0.1455022363 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001159_170 0.1460249035 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
20 Hb_002814_050 0.1474131301 - - PREDICTED: sugar carrier protein A [Jatropha curcas]

Gene co-expression network

sample Hb_000155_040 Hb_000155_040 Hb_002448_020 Hb_002448_020 Hb_000155_040--Hb_002448_020 Hb_012743_020 Hb_012743_020 Hb_000155_040--Hb_012743_020 Hb_002307_010 Hb_002307_010 Hb_000155_040--Hb_002307_010 Hb_000347_420 Hb_000347_420 Hb_000155_040--Hb_000347_420 Hb_172633_020 Hb_172633_020 Hb_000155_040--Hb_172633_020 Hb_001114_120 Hb_001114_120 Hb_000155_040--Hb_001114_120 Hb_006846_030 Hb_006846_030 Hb_002448_020--Hb_006846_030 Hb_065521_010 Hb_065521_010 Hb_002448_020--Hb_065521_010 Hb_007386_030 Hb_007386_030 Hb_002448_020--Hb_007386_030 Hb_003847_050 Hb_003847_050 Hb_002448_020--Hb_003847_050 Hb_007875_020 Hb_007875_020 Hb_002448_020--Hb_007875_020 Hb_002448_020--Hb_001114_120 Hb_005357_020 Hb_005357_020 Hb_012743_020--Hb_005357_020 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_000589_240 Hb_000589_240 Hb_012743_020--Hb_000589_240 Hb_001143_140 Hb_001143_140 Hb_012743_020--Hb_001143_140 Hb_029260_010 Hb_029260_010 Hb_012743_020--Hb_029260_010 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130 Hb_002307_010--Hb_001114_120 Hb_001018_080 Hb_001018_080 Hb_002307_010--Hb_001018_080 Hb_011537_020 Hb_011537_020 Hb_002307_010--Hb_011537_020 Hb_000112_050 Hb_000112_050 Hb_002307_010--Hb_000112_050 Hb_000834_040 Hb_000834_040 Hb_002307_010--Hb_000834_040 Hb_003847_170 Hb_003847_170 Hb_002307_010--Hb_003847_170 Hb_007943_020 Hb_007943_020 Hb_000347_420--Hb_007943_020 Hb_000347_420--Hb_029260_010 Hb_004307_070 Hb_004307_070 Hb_000347_420--Hb_004307_070 Hb_138606_020 Hb_138606_020 Hb_000347_420--Hb_138606_020 Hb_000095_070 Hb_000095_070 Hb_000347_420--Hb_000095_070 Hb_000994_100 Hb_000994_100 Hb_000347_420--Hb_000994_100 Hb_002490_090 Hb_002490_090 Hb_172633_020--Hb_002490_090 Hb_184942_010 Hb_184942_010 Hb_172633_020--Hb_184942_010 Hb_002042_160 Hb_002042_160 Hb_172633_020--Hb_002042_160 Hb_150084_010 Hb_150084_010 Hb_172633_020--Hb_150084_010 Hb_006120_030 Hb_006120_030 Hb_172633_020--Hb_006120_030 Hb_000963_010 Hb_000963_010 Hb_172633_020--Hb_000963_010 Hb_001114_120--Hb_000112_050 Hb_000203_080 Hb_000203_080 Hb_001114_120--Hb_000203_080 Hb_001114_120--Hb_003847_050 Hb_001114_120--Hb_007386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.091224 12.2329 5.57102 18.7408 0.0798901 0.0251905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4308 0.276553 0.151471 25.9455 14.6589

CAGE analysis