Hb_000155_060

Information

Type -
Description -
Location Contig155: 146659-147660
Sequence    

Annotation

kegg
ID rcu:RCOM_1673160
description ATP binding protein, putative
nr
ID XP_002509422.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LX29
description Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1
trembl
ID B9RB88
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1673160 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase-like protein acr4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_060 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000258_150 0.2639842798 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
3 Hb_019592_010 0.265695109 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
4 Hb_004449_230 0.2662895082 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_001001_050 0.2874144403 - - CXE protein [Hevea brasiliensis]
6 Hb_000964_100 0.302294989 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
7 Hb_022174_010 0.3074148883 - - elicitor-responsive protein [Hevea brasiliensis]
8 Hb_000313_320 0.308046891 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
9 Hb_019516_090 0.3134641598 - - hypothetical protein POPTR_0004s06350g [Populus trichocarpa]
10 Hb_000098_020 0.3209413839 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
11 Hb_000424_080 0.3270769143 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
12 Hb_000200_190 0.3293617737 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
13 Hb_113084_010 0.3313253322 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_001077_020 0.3320375016 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
15 Hb_085892_020 0.3372347978 - - -
16 Hb_006502_100 0.339126523 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
17 Hb_128496_010 0.3410919757 - - unnamed protein product [Vitis vinifera]
18 Hb_000101_180 0.3422681865 - - -
19 Hb_095471_010 0.3458220941 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
20 Hb_002450_110 0.3460914109 - - PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000155_060 Hb_000155_060 Hb_000258_150 Hb_000258_150 Hb_000155_060--Hb_000258_150 Hb_019592_010 Hb_019592_010 Hb_000155_060--Hb_019592_010 Hb_004449_230 Hb_004449_230 Hb_000155_060--Hb_004449_230 Hb_001001_050 Hb_001001_050 Hb_000155_060--Hb_001001_050 Hb_000964_100 Hb_000964_100 Hb_000155_060--Hb_000964_100 Hb_022174_010 Hb_022174_010 Hb_000155_060--Hb_022174_010 Hb_010560_060 Hb_010560_060 Hb_000258_150--Hb_010560_060 Hb_000258_150--Hb_022174_010 Hb_003654_010 Hb_003654_010 Hb_000258_150--Hb_003654_010 Hb_000365_260 Hb_000365_260 Hb_000258_150--Hb_000365_260 Hb_004007_160 Hb_004007_160 Hb_000258_150--Hb_004007_160 Hb_000098_020 Hb_000098_020 Hb_000258_150--Hb_000098_020 Hb_007749_010 Hb_007749_010 Hb_019592_010--Hb_007749_010 Hb_000684_130 Hb_000684_130 Hb_019592_010--Hb_000684_130 Hb_004055_110 Hb_004055_110 Hb_019592_010--Hb_004055_110 Hb_000424_080 Hb_000424_080 Hb_019592_010--Hb_000424_080 Hb_019592_010--Hb_000098_020 Hb_004449_230--Hb_001001_050 Hb_004449_230--Hb_000964_100 Hb_000472_010 Hb_000472_010 Hb_004449_230--Hb_000472_010 Hb_004449_230--Hb_000424_080 Hb_013877_020 Hb_013877_020 Hb_004449_230--Hb_013877_020 Hb_001001_050--Hb_000424_080 Hb_002235_270 Hb_002235_270 Hb_001001_050--Hb_002235_270 Hb_004064_030 Hb_004064_030 Hb_001001_050--Hb_004064_030 Hb_000668_090 Hb_000668_090 Hb_001001_050--Hb_000668_090 Hb_001001_050--Hb_000964_100 Hb_011903_010 Hb_011903_010 Hb_000964_100--Hb_011903_010 Hb_113084_010 Hb_113084_010 Hb_000964_100--Hb_113084_010 Hb_000016_050 Hb_000016_050 Hb_000964_100--Hb_000016_050 Hb_013399_080 Hb_013399_080 Hb_022174_010--Hb_013399_080 Hb_000069_670 Hb_000069_670 Hb_022174_010--Hb_000069_670 Hb_000096_080 Hb_000096_080 Hb_022174_010--Hb_000096_080 Hb_145655_010 Hb_145655_010 Hb_022174_010--Hb_145655_010 Hb_000207_100 Hb_000207_100 Hb_022174_010--Hb_000207_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96992 0.058931 0.0495887 0.804533 0.456264 0.0194417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0505502 0.0795153 0.146378 0.0159876 0.244038

CAGE analysis