Hb_000155_110

Information

Type -
Description -
Location Contig155: 220186-225344
Sequence    

Annotation

kegg
ID rcu:RCOM_1011410
description Auxin response factor, putative
nr
ID XP_002522498.1
description Auxin response factor, putative [Ricinus communis]
swissprot
ID O23661
description Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2
trembl
ID B9S929
description Auxin response factor OS=Ricinus communis GN=RCOM_1011410 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13434: 219812-225214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_110 0.0 - - Auxin response factor, putative [Ricinus communis]
2 Hb_002686_310 0.1199493276 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
3 Hb_003055_040 0.1245639214 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
4 Hb_001247_300 0.1296712437 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
5 Hb_002693_060 0.1340612344 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_002414_060 0.1367841695 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
7 Hb_005081_020 0.1374852156 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
8 Hb_008246_020 0.1379145254 - - amidophosphoribosyltransferase, putative [Ricinus communis]
9 Hb_000072_130 0.1386440107 - - hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
10 Hb_143629_130 0.1429390808 - - unnamed protein product [Coffea canephora]
11 Hb_001157_200 0.1454865473 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
12 Hb_033501_010 0.1455888729 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
13 Hb_004094_020 0.1471434086 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
14 Hb_000915_240 0.1478892234 - - catalytic, putative [Ricinus communis]
15 Hb_001500_100 0.1479050578 - - conserved hypothetical protein [Ricinus communis]
16 Hb_099878_030 0.1481108835 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
17 Hb_000836_550 0.1481420232 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
18 Hb_000692_160 0.1509832247 - - Transportin 1 isoform 1 [Theobroma cacao]
19 Hb_000109_170 0.1515802146 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
20 Hb_001006_270 0.1529731877 - - peptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000155_110 Hb_000155_110 Hb_002686_310 Hb_002686_310 Hb_000155_110--Hb_002686_310 Hb_003055_040 Hb_003055_040 Hb_000155_110--Hb_003055_040 Hb_001247_300 Hb_001247_300 Hb_000155_110--Hb_001247_300 Hb_002693_060 Hb_002693_060 Hb_000155_110--Hb_002693_060 Hb_002414_060 Hb_002414_060 Hb_000155_110--Hb_002414_060 Hb_005081_020 Hb_005081_020 Hb_000155_110--Hb_005081_020 Hb_007558_100 Hb_007558_100 Hb_002686_310--Hb_007558_100 Hb_075315_010 Hb_075315_010 Hb_002686_310--Hb_075315_010 Hb_002686_310--Hb_003055_040 Hb_000915_240 Hb_000915_240 Hb_002686_310--Hb_000915_240 Hb_179306_020 Hb_179306_020 Hb_002686_310--Hb_179306_020 Hb_143629_130 Hb_143629_130 Hb_002686_310--Hb_143629_130 Hb_003055_040--Hb_179306_020 Hb_001258_110 Hb_001258_110 Hb_003055_040--Hb_001258_110 Hb_007137_050 Hb_007137_050 Hb_003055_040--Hb_007137_050 Hb_000836_550 Hb_000836_550 Hb_003055_040--Hb_000836_550 Hb_004450_070 Hb_004450_070 Hb_003055_040--Hb_004450_070 Hb_001500_100 Hb_001500_100 Hb_003055_040--Hb_001500_100 Hb_001006_270 Hb_001006_270 Hb_001247_300--Hb_001006_270 Hb_001247_300--Hb_002686_310 Hb_002477_040 Hb_002477_040 Hb_001247_300--Hb_002477_040 Hb_001247_300--Hb_000915_240 Hb_001437_190 Hb_001437_190 Hb_001247_300--Hb_001437_190 Hb_001269_140 Hb_001269_140 Hb_002693_060--Hb_001269_140 Hb_001105_160 Hb_001105_160 Hb_002693_060--Hb_001105_160 Hb_011716_090 Hb_011716_090 Hb_002693_060--Hb_011716_090 Hb_000140_480 Hb_000140_480 Hb_002693_060--Hb_000140_480 Hb_001427_070 Hb_001427_070 Hb_002693_060--Hb_001427_070 Hb_083799_010 Hb_083799_010 Hb_002693_060--Hb_083799_010 Hb_000429_150 Hb_000429_150 Hb_002414_060--Hb_000429_150 Hb_002414_060--Hb_143629_130 Hb_002414_060--Hb_007558_100 Hb_004317_060 Hb_004317_060 Hb_002414_060--Hb_004317_060 Hb_138475_010 Hb_138475_010 Hb_002414_060--Hb_138475_010 Hb_000140_280 Hb_000140_280 Hb_002414_060--Hb_000140_280 Hb_005081_020--Hb_083799_010 Hb_000692_160 Hb_000692_160 Hb_005081_020--Hb_000692_160 Hb_005081_020--Hb_075315_010 Hb_002391_210 Hb_002391_210 Hb_005081_020--Hb_002391_210 Hb_005081_020--Hb_001269_140 Hb_003906_170 Hb_003906_170 Hb_005081_020--Hb_003906_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.92407 14.166 3.29543 33.4288 6.37979 20.7137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2751 7.32277 12.631 33.4763 11.4459

CAGE analysis