Hb_000155_130

Information

Type -
Description -
Location Contig155: 240519-242924
Sequence    

Annotation

kegg
ID rcu:RCOM_1011920
description hypothetical protein
nr
ID XP_002522499.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S930
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1011920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000480_020 0.0070885177 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005841_070 0.0501147034 - - conserved hypothetical protein [Ricinus communis]
4 Hb_092655_010 0.0592648856 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
5 Hb_009164_010 0.076578985 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
6 Hb_002757_040 0.0907368994 - - -
7 Hb_000594_010 0.0926827494 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
8 Hb_002757_030 0.1042170612 - - unnamed protein product [Vitis vinifera]
9 Hb_025107_010 0.1074000231 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
10 Hb_001174_040 0.1082386576 - - -
11 Hb_004030_040 0.1120546854 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
12 Hb_009620_080 0.1133951235 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
13 Hb_009767_040 0.1143215942 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
14 Hb_010327_060 0.1144106239 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
15 Hb_000028_090 0.1144687361 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
16 Hb_005043_040 0.1148854687 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
17 Hb_000024_100 0.115019344 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
18 Hb_000521_030 0.1164360937 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
19 Hb_027472_250 0.1255572825 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
20 Hb_019953_010 0.1316662576 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]

Gene co-expression network

sample Hb_000155_130 Hb_000155_130 Hb_000480_020 Hb_000480_020 Hb_000155_130--Hb_000480_020 Hb_005841_070 Hb_005841_070 Hb_000155_130--Hb_005841_070 Hb_092655_010 Hb_092655_010 Hb_000155_130--Hb_092655_010 Hb_009164_010 Hb_009164_010 Hb_000155_130--Hb_009164_010 Hb_002757_040 Hb_002757_040 Hb_000155_130--Hb_002757_040 Hb_000594_010 Hb_000594_010 Hb_000155_130--Hb_000594_010 Hb_000480_020--Hb_005841_070 Hb_000480_020--Hb_092655_010 Hb_000480_020--Hb_009164_010 Hb_000480_020--Hb_002757_040 Hb_000480_020--Hb_000594_010 Hb_009620_080 Hb_009620_080 Hb_005841_070--Hb_009620_080 Hb_005841_070--Hb_002757_040 Hb_000028_090 Hb_000028_090 Hb_005841_070--Hb_000028_090 Hb_001174_040 Hb_001174_040 Hb_005841_070--Hb_001174_040 Hb_025107_010 Hb_025107_010 Hb_092655_010--Hb_025107_010 Hb_005043_040 Hb_005043_040 Hb_092655_010--Hb_005043_040 Hb_000024_100 Hb_000024_100 Hb_092655_010--Hb_000024_100 Hb_092655_010--Hb_000594_010 Hb_004030_040 Hb_004030_040 Hb_009164_010--Hb_004030_040 Hb_002757_030 Hb_002757_030 Hb_009164_010--Hb_002757_030 Hb_009164_010--Hb_002757_040 Hb_009164_010--Hb_000594_010 Hb_010327_060 Hb_010327_060 Hb_009164_010--Hb_010327_060 Hb_006651_020 Hb_006651_020 Hb_009164_010--Hb_006651_020 Hb_002757_040--Hb_010327_060 Hb_002757_040--Hb_000028_090 Hb_002757_040--Hb_002757_030 Hb_002757_040--Hb_009620_080 Hb_000868_020 Hb_000868_020 Hb_002757_040--Hb_000868_020 Hb_019953_010 Hb_019953_010 Hb_000594_010--Hb_019953_010 Hb_002636_170 Hb_002636_170 Hb_000594_010--Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_000594_010--Hb_000696_130 Hb_000594_010--Hb_025107_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.301309 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0628238

CAGE analysis