Hb_000155_140

Information

Type -
Description -
Location Contig155: 247779-253547
Sequence    

Annotation

kegg
ID rcu:RCOM_1011940
description o-methyltransferase, putative (EC:2.1.1.146)
nr
ID XP_002522501.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID B6VJS4
description Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2
trembl
ID B9S932
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1011940 PE=4 SV=1
Gene Ontology
ID GO:0008171
description 6a-hydroxymaackiain methyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13436: 247963-248223 , PASA_asmbl_13439: 254058-254644
cDNA
(Sanger)
(ID:Location)		 009_G07.ab1: 254352-254588

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_140 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_003891_060 0.072884031 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
3 Hb_000229_080 0.0765871961 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
4 Hb_000352_080 0.0786132304 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
5 Hb_001134_040 0.0797630745 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
6 Hb_058620_010 0.0812857655 - - cytochrome P450, putative [Ricinus communis]
7 Hb_009780_060 0.0843286194 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
8 Hb_000500_190 0.0845238884 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
9 Hb_004254_070 0.0878358851 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
10 Hb_001456_040 0.0896751381 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
11 Hb_000446_100 0.0903183933 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_020480_050 0.0936332989 - - putative wall-associated kinase family protein [Populus trichocarpa]
13 Hb_000712_070 0.0945118322 - - conserved hypothetical protein [Ricinus communis]
14 Hb_014034_020 0.0947887522 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
15 Hb_000025_250 0.0965964867 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
16 Hb_010697_030 0.0966308458 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
17 Hb_000141_070 0.0994865908 - - l-lactate dehydrogenase, putative [Ricinus communis]
18 Hb_007483_040 0.1001500332 - - PREDICTED: protein SRG1-like [Jatropha curcas]
19 Hb_135392_010 0.100554315 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_002805_230 0.1020097471 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000155_140 Hb_000155_140 Hb_003891_060 Hb_003891_060 Hb_000155_140--Hb_003891_060 Hb_000229_080 Hb_000229_080 Hb_000155_140--Hb_000229_080 Hb_000352_080 Hb_000352_080 Hb_000155_140--Hb_000352_080 Hb_001134_040 Hb_001134_040 Hb_000155_140--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_000155_140--Hb_058620_010 Hb_009780_060 Hb_009780_060 Hb_000155_140--Hb_009780_060 Hb_003891_060--Hb_000352_080 Hb_000446_100 Hb_000446_100 Hb_003891_060--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_003891_060--Hb_004254_070 Hb_001901_090 Hb_001901_090 Hb_003891_060--Hb_001901_090 Hb_001456_040 Hb_001456_040 Hb_003891_060--Hb_001456_040 Hb_000500_190 Hb_000500_190 Hb_000229_080--Hb_000500_190 Hb_014034_020 Hb_014034_020 Hb_000229_080--Hb_014034_020 Hb_000229_080--Hb_004254_070 Hb_000563_060 Hb_000563_060 Hb_000229_080--Hb_000563_060 Hb_003188_020 Hb_003188_020 Hb_000229_080--Hb_003188_020 Hb_000229_080--Hb_000446_100 Hb_000352_080--Hb_001134_040 Hb_000352_080--Hb_058620_010 Hb_002805_230 Hb_002805_230 Hb_000352_080--Hb_002805_230 Hb_007417_020 Hb_007417_020 Hb_000352_080--Hb_007417_020 Hb_001134_040--Hb_002805_230 Hb_001134_040--Hb_058620_010 Hb_003090_070 Hb_003090_070 Hb_001134_040--Hb_003090_070 Hb_000712_070 Hb_000712_070 Hb_001134_040--Hb_000712_070 Hb_001134_040--Hb_007417_020 Hb_135392_010 Hb_135392_010 Hb_001134_040--Hb_135392_010 Hb_058620_010--Hb_000712_070 Hb_058620_010--Hb_002805_230 Hb_004097_080 Hb_004097_080 Hb_058620_010--Hb_004097_080 Hb_058620_010--Hb_135392_010 Hb_058620_010--Hb_003090_070 Hb_002900_020 Hb_002900_020 Hb_009780_060--Hb_002900_020 Hb_004592_020 Hb_004592_020 Hb_009780_060--Hb_004592_020 Hb_005433_050 Hb_005433_050 Hb_009780_060--Hb_005433_050 Hb_009780_060--Hb_000229_080 Hb_000445_020 Hb_000445_020 Hb_009780_060--Hb_000445_020 Hb_000025_250 Hb_000025_250 Hb_009780_060--Hb_000025_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.357345 0.255757 0.0645521 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0429971 0 8.71538 0.0608908

CAGE analysis