Hb_000155_160

Information

Type -
Description -
Location Contig155: 271854-274543
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05880g
description hypothetical protein
nr
ID XP_006377434.1
description hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
swissprot
ID Q9P7W0
description OPA3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.11 PE=3 SV=1
trembl
ID B9N9L1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05880g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13440: 271878-274531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_160 0.0 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
2 Hb_000419_020 0.0712109316 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000085_350 0.0780843553 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
4 Hb_007747_050 0.0807940471 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
5 Hb_000847_060 0.0840396645 - - hypothetical protein [Jatropha curcas]
6 Hb_001863_430 0.0856633039 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
7 Hb_000327_230 0.0857562478 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
8 Hb_003494_050 0.0906112959 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
9 Hb_002811_170 0.0913720266 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
10 Hb_000136_260 0.0914193153 - - 40S ribosomal protein S5A [Hevea brasiliensis]
11 Hb_000538_120 0.0917210445 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
12 Hb_003669_020 0.0918860764 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
13 Hb_002239_050 0.0923985434 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
14 Hb_000310_020 0.0924550285 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
15 Hb_001931_010 0.0939211778 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
16 Hb_003929_150 0.0955472343 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
17 Hb_000505_130 0.0960391518 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
18 Hb_007894_060 0.0964172819 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
19 Hb_015299_030 0.0966205151 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
20 Hb_044653_040 0.0982241558 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000155_160 Hb_000155_160 Hb_000419_020 Hb_000419_020 Hb_000155_160--Hb_000419_020 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_007747_050 Hb_007747_050 Hb_000155_160--Hb_007747_050 Hb_000847_060 Hb_000847_060 Hb_000155_160--Hb_000847_060 Hb_001863_430 Hb_001863_430 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_000419_020--Hb_007747_050 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_000085_350--Hb_007747_050 Hb_000538_120 Hb_000538_120 Hb_000085_350--Hb_000538_120 Hb_000735_090 Hb_000735_090 Hb_000085_350--Hb_000735_090 Hb_000302_140 Hb_000302_140 Hb_000085_350--Hb_000302_140 Hb_000085_350--Hb_002811_170 Hb_007747_050--Hb_002811_170 Hb_007747_050--Hb_000735_090 Hb_003494_050 Hb_003494_050 Hb_007747_050--Hb_003494_050 Hb_007747_050--Hb_001863_430 Hb_001728_040 Hb_001728_040 Hb_000847_060--Hb_001728_040 Hb_002239_050 Hb_002239_050 Hb_000847_060--Hb_002239_050 Hb_000847_060--Hb_000419_020 Hb_007894_060 Hb_007894_060 Hb_000847_060--Hb_007894_060 Hb_000161_130 Hb_000161_130 Hb_000847_060--Hb_000161_130 Hb_001016_150 Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_001863_430--Hb_002811_170 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_000327_230--Hb_000136_260 Hb_000001_060 Hb_000001_060 Hb_000327_230--Hb_000001_060 Hb_000099_150 Hb_000099_150 Hb_000327_230--Hb_000099_150 Hb_000005_090 Hb_000005_090 Hb_000327_230--Hb_000005_090 Hb_000327_230--Hb_001016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41514 3.74163 5.57983 6.29378 2.20441 3.25448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.01426 13.9538 3.65503 4.68327 5.05677

CAGE analysis