Hb_000155_190

Information

Type -
Description -
Location Contig155: 308786-310670
Sequence    

Annotation

kegg
ID rcu:RCOM_1012240
description hypothetical protein
nr
ID XP_002522511.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S942
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1012240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13445: 308893-310576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004195_160 0.0785305048 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
3 Hb_002375_020 0.0786001749 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
4 Hb_010863_080 0.0803292058 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
5 Hb_000224_170 0.0844482874 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
6 Hb_002553_020 0.0853991935 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002027_260 0.0858057931 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
8 Hb_012634_010 0.0879486677 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
9 Hb_006332_020 0.088718608 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
10 Hb_006400_040 0.0911646945 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
11 Hb_000417_180 0.0916552435 - - 60S ribosomal protein L11, putative [Ricinus communis]
12 Hb_001488_330 0.0945085473 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
13 Hb_002026_100 0.0947495166 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
14 Hb_001623_420 0.0956443891 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_007547_010 0.0957758289 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
16 Hb_000000_080 0.0959546335 - - lipoate-protein ligase B, putative [Ricinus communis]
17 Hb_001377_290 0.0975787334 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
18 Hb_007426_230 0.0977923369 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
19 Hb_003097_150 0.0981782261 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
20 Hb_168707_030 0.1004102767 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]

Gene co-expression network

sample Hb_000155_190 Hb_000155_190 Hb_004195_160 Hb_004195_160 Hb_000155_190--Hb_004195_160 Hb_002375_020 Hb_002375_020 Hb_000155_190--Hb_002375_020 Hb_010863_080 Hb_010863_080 Hb_000155_190--Hb_010863_080 Hb_000224_170 Hb_000224_170 Hb_000155_190--Hb_000224_170 Hb_002553_020 Hb_002553_020 Hb_000155_190--Hb_002553_020 Hb_002027_260 Hb_002027_260 Hb_000155_190--Hb_002027_260 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_010381_070 Hb_010381_070 Hb_002375_020--Hb_010381_070 Hb_000923_020 Hb_000923_020 Hb_002375_020--Hb_000923_020 Hb_001301_160 Hb_001301_160 Hb_002375_020--Hb_001301_160 Hb_002375_020--Hb_002027_260 Hb_004109_200 Hb_004109_200 Hb_002375_020--Hb_004109_200 Hb_002375_020--Hb_006332_020 Hb_003297_030 Hb_003297_030 Hb_010863_080--Hb_003297_030 Hb_000417_180 Hb_000417_180 Hb_010863_080--Hb_000417_180 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_000179_210 Hb_000179_210 Hb_010863_080--Hb_000179_210 Hb_010863_080--Hb_004195_160 Hb_001623_420 Hb_001623_420 Hb_000224_170--Hb_001623_420 Hb_031527_040 Hb_031527_040 Hb_000224_170--Hb_031527_040 Hb_000926_330 Hb_000926_330 Hb_000224_170--Hb_000926_330 Hb_000061_420 Hb_000061_420 Hb_000224_170--Hb_000061_420 Hb_181235_010 Hb_181235_010 Hb_000224_170--Hb_181235_010 Hb_003777_330 Hb_003777_330 Hb_000224_170--Hb_003777_330 Hb_159558_030 Hb_159558_030 Hb_002553_020--Hb_159558_030 Hb_003728_020 Hb_003728_020 Hb_002553_020--Hb_003728_020 Hb_010128_130 Hb_010128_130 Hb_002553_020--Hb_010128_130 Hb_004884_220 Hb_004884_220 Hb_002553_020--Hb_004884_220 Hb_000500_130 Hb_000500_130 Hb_002553_020--Hb_000500_130 Hb_006400_040 Hb_006400_040 Hb_002027_260--Hb_006400_040 Hb_012634_010 Hb_012634_010 Hb_002027_260--Hb_012634_010 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.0338 24.7904 9.73117 18.8777 57.1092 41.488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0781 57.6387 45.2112 16.9094 10.4755

CAGE analysis