Hb_000155_200

Information

Type -
Description -
Location Contig155: 311623-314139
Sequence    

Annotation

kegg
ID tcc:TCM_029778
description RAB GTPase A1F
nr
ID AGL52582.1
description Rab7 [Hevea brasiliensis]
swissprot
ID Q9FJH0
description Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1
trembl
ID A0A023HJ75
description Rab7 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba1f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13446: 311692-312035 , PASA_asmbl_13447: 313201-313322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_200 0.0 - - Rab7 [Hevea brasiliensis]
2 Hb_012114_070 0.0796039443 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
3 Hb_000205_090 0.083580151 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
4 Hb_004109_170 0.0837722677 - - PREDICTED: probable ribokinase [Jatropha curcas]
5 Hb_000367_160 0.0845124381 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
6 Hb_000120_960 0.0860548252 - - isocitrate dehydrogenase, putative [Ricinus communis]
7 Hb_000340_570 0.0870611047 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
8 Hb_000915_090 0.0883260389 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
9 Hb_004157_020 0.0891020001 - - PREDICTED: histone H2B-like [Gossypium raimondii]
10 Hb_000193_110 0.0891703764 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
11 Hb_001123_130 0.0917856369 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
12 Hb_007044_120 0.0924005355 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
13 Hb_000039_160 0.0926184489 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
14 Hb_008566_050 0.0931692027 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_012286_030 0.0939975785 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
16 Hb_129204_030 0.0942938316 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
17 Hb_001437_150 0.094436542 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
18 Hb_000527_060 0.0944652201 - - Protein C20orf11, putative [Ricinus communis]
19 Hb_050514_010 0.0950634658 - - hypothetical protein 29 [Hevea brasiliensis]
20 Hb_010560_020 0.0958163587 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]

Gene co-expression network

sample Hb_000155_200 Hb_000155_200 Hb_012114_070 Hb_012114_070 Hb_000155_200--Hb_012114_070 Hb_000205_090 Hb_000205_090 Hb_000155_200--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000155_200--Hb_004109_170 Hb_000367_160 Hb_000367_160 Hb_000155_200--Hb_000367_160 Hb_000120_960 Hb_000120_960 Hb_000155_200--Hb_000120_960 Hb_000340_570 Hb_000340_570 Hb_000155_200--Hb_000340_570 Hb_003038_240 Hb_003038_240 Hb_012114_070--Hb_003038_240 Hb_018133_020 Hb_018133_020 Hb_012114_070--Hb_018133_020 Hb_000614_220 Hb_000614_220 Hb_012114_070--Hb_000614_220 Hb_000614_160 Hb_000614_160 Hb_012114_070--Hb_000614_160 Hb_004157_020 Hb_004157_020 Hb_012114_070--Hb_004157_020 Hb_000205_090--Hb_004109_170 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_000367_160--Hb_012286_030 Hb_019280_050 Hb_019280_050 Hb_000367_160--Hb_019280_050 Hb_004410_080 Hb_004410_080 Hb_000367_160--Hb_004410_080 Hb_000193_110 Hb_000193_110 Hb_000367_160--Hb_000193_110 Hb_000336_150 Hb_000336_150 Hb_000367_160--Hb_000336_150 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_001545_160 Hb_001545_160 Hb_000340_570--Hb_001545_160 Hb_006831_120 Hb_006831_120 Hb_000340_570--Hb_006831_120 Hb_010175_040 Hb_010175_040 Hb_000340_570--Hb_010175_040 Hb_004899_370 Hb_004899_370 Hb_000340_570--Hb_004899_370 Hb_000261_140 Hb_000261_140 Hb_000340_570--Hb_000261_140 Hb_000340_570--Hb_000205_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9428 7.24527 12.0536 6.61152 6.08063 6.06592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2793 19.6091 17.0773 4.93984 6.71392

CAGE analysis