Hb_000156_030

Information

Type -
Description -
Location Contig156: 18785-22578
Sequence    

Annotation

kegg
ID rcu:RCOM_0632910
description hypothetical protein
nr
ID XP_002519690.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S121
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13530: 18787-22555
cDNA
(Sanger)
(ID:Location)		 006_K22.ab1: 19467-22517 , 012_N20.ab1: 19457-22526 , 021_A23.ab1: 19448-22526 , 035_F20.ab1: 19431-22553

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003540_140 0.1212853896 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
3 Hb_000329_540 0.1264726667 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
4 Hb_000161_100 0.1267203958 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
5 Hb_004032_460 0.1292626394 - - -
6 Hb_000441_230 0.1313578125 - - unnamed protein product [Coffea canephora]
7 Hb_002897_040 0.1314647999 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
8 Hb_000005_320 0.1317448034 - - conserved hypothetical protein [Ricinus communis]
9 Hb_031862_170 0.1319176431 - - immunophilin, putative [Ricinus communis]
10 Hb_000613_020 0.1338381856 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
11 Hb_003673_020 0.1358972098 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
12 Hb_000056_120 0.1368201928 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_000365_350 0.1397275042 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
14 Hb_000018_160 0.1433247612 - - nitrate transporter, putative [Ricinus communis]
15 Hb_000173_370 0.1444512585 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
16 Hb_061256_030 0.1451422842 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_005568_070 0.1475416537 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
18 Hb_000173_210 0.1477120883 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
19 Hb_000211_090 0.1482658078 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
20 Hb_000211_080 0.1528851798 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_000156_030 Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_000156_030--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_000156_030--Hb_000329_540 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_004032_460 Hb_004032_460 Hb_000156_030--Hb_004032_460 Hb_000441_230 Hb_000441_230 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_003540_140--Hb_000441_230 Hb_003540_140--Hb_000329_540 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_003540_140--Hb_003226_170 Hb_000329_540--Hb_000441_230 Hb_005568_070 Hb_005568_070 Hb_000329_540--Hb_005568_070 Hb_000175_530 Hb_000175_530 Hb_000329_540--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_000329_540--Hb_000580_060 Hb_000211_080 Hb_000211_080 Hb_000161_100--Hb_000211_080 Hb_003673_020 Hb_003673_020 Hb_000161_100--Hb_003673_020 Hb_000018_160 Hb_000018_160 Hb_000161_100--Hb_000018_160 Hb_000005_320 Hb_000005_320 Hb_000161_100--Hb_000005_320 Hb_031073_010 Hb_031073_010 Hb_000161_100--Hb_031073_010 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_000173_370 Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_000441_230--Hb_000580_060 Hb_006631_010 Hb_006631_010 Hb_002897_040--Hb_006631_010 Hb_000173_210 Hb_000173_210 Hb_002897_040--Hb_000173_210 Hb_000544_120 Hb_000544_120 Hb_002897_040--Hb_000544_120 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_002897_040--Hb_000173_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1866.93 113.527 112.091 131.001 1530.12 1117.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
368.725 68.4103 160.376 83.2764 56.6763

CAGE analysis