Hb_000156_080

Information

Type -
Description -
Location Contig156: 72383-76509
Sequence    

Annotation

kegg
ID rcu:RCOM_0632940
description Potassium channel KAT2, putative
nr
ID XP_002519693.1
description Potassium channel KAT2, putative [Ricinus communis]
swissprot
ID Q39128
description Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2
trembl
ID B9S124
description Potassium channel KAT2, putative OS=Ricinus communis GN=RCOM_0632940 PE=4 SV=1
Gene Ontology
ID GO:0005249
description potassium channel kat1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_080 0.0 - - Potassium channel KAT2, putative [Ricinus communis]
2 Hb_004109_150 0.1058070173 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
3 Hb_011457_080 0.1219687034 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
4 Hb_004218_080 0.1257677463 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
5 Hb_000402_180 0.1280001327 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
6 Hb_002030_100 0.1291759814 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
7 Hb_007193_030 0.1312183282 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
8 Hb_012799_040 0.1312343123 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
9 Hb_001660_130 0.13184109 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
10 Hb_036492_020 0.1333274261 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_002783_130 0.1342396915 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
12 Hb_000656_260 0.1365330952 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
13 Hb_003929_040 0.1411564874 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
14 Hb_152414_010 0.1430998739 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
15 Hb_006358_030 0.1456219891 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
16 Hb_028285_020 0.1484902715 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
17 Hb_012814_030 0.1527455418 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
18 Hb_001247_010 0.1530441519 - - galactinol synthase [Manihot esculenta]
19 Hb_010180_050 0.1538424752 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
20 Hb_073171_050 0.1539749387 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]

Gene co-expression network

sample Hb_000156_080 Hb_000156_080 Hb_004109_150 Hb_004109_150 Hb_000156_080--Hb_004109_150 Hb_011457_080 Hb_011457_080 Hb_000156_080--Hb_011457_080 Hb_004218_080 Hb_004218_080 Hb_000156_080--Hb_004218_080 Hb_000402_180 Hb_000402_180 Hb_000156_080--Hb_000402_180 Hb_002030_100 Hb_002030_100 Hb_000156_080--Hb_002030_100 Hb_007193_030 Hb_007193_030 Hb_000156_080--Hb_007193_030 Hb_004109_150--Hb_002030_100 Hb_002783_130 Hb_002783_130 Hb_004109_150--Hb_002783_130 Hb_006358_030 Hb_006358_030 Hb_004109_150--Hb_006358_030 Hb_000656_260 Hb_000656_260 Hb_004109_150--Hb_000656_260 Hb_036492_020 Hb_036492_020 Hb_004109_150--Hb_036492_020 Hb_003106_240 Hb_003106_240 Hb_011457_080--Hb_003106_240 Hb_010180_050 Hb_010180_050 Hb_011457_080--Hb_010180_050 Hb_027402_100 Hb_027402_100 Hb_011457_080--Hb_027402_100 Hb_028285_020 Hb_028285_020 Hb_011457_080--Hb_028285_020 Hb_011457_080--Hb_004218_080 Hb_004218_080--Hb_007193_030 Hb_005725_280 Hb_005725_280 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_004218_080--Hb_003106_240 Hb_000402_180--Hb_036492_020 Hb_134022_010 Hb_134022_010 Hb_000402_180--Hb_134022_010 Hb_003929_040 Hb_003929_040 Hb_000402_180--Hb_003929_040 Hb_070613_010 Hb_070613_010 Hb_000402_180--Hb_070613_010 Hb_001660_130 Hb_001660_130 Hb_000402_180--Hb_001660_130 Hb_008810_030 Hb_008810_030 Hb_000402_180--Hb_008810_030 Hb_002030_100--Hb_006358_030 Hb_002030_100--Hb_036492_020 Hb_000032_590 Hb_000032_590 Hb_002030_100--Hb_000032_590 Hb_002030_100--Hb_000656_260 Hb_003073_040 Hb_003073_040 Hb_002030_100--Hb_003073_040 Hb_001369_020 Hb_001369_020 Hb_007193_030--Hb_001369_020 Hb_001623_410 Hb_001623_410 Hb_007193_030--Hb_001623_410 Hb_073171_050 Hb_073171_050 Hb_007193_030--Hb_073171_050 Hb_007193_030--Hb_005725_280 Hb_003905_040 Hb_003905_040 Hb_007193_030--Hb_003905_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00724623 1.49988 0.864773 0.399992 0.0217607 0.0126648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.032881 0.0129371 0.0246957 0.0154049 0.660942

CAGE analysis