Hb_000156_090

Information

Type -
Description -
Location Contig156: 76537-84468
Sequence    

Annotation

kegg
ID rcu:RCOM_0632950
description endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (EC:3.2.1.113)
nr
ID XP_012072097.1
description PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
swissprot
ID Q93Y37
description Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 OS=Arabidopsis thaliana GN=MNS3 PE=2 SV=1
trembl
ID A0A067L0E5
description alpha-1,2-Mannosidase OS=Jatropha curcas GN=JCGZ_04608 PE=3 SV=1
Gene Ontology
ID GO:0005768
description mannosyl-oligosaccharide -alpha-mannosidase mns3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13532: 76363-84369 , PASA_asmbl_13533: 83773-83932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_090 0.0 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
2 Hb_002965_050 0.0499939983 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
3 Hb_003018_030 0.0741901604 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
4 Hb_002900_120 0.0742782066 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
5 Hb_003428_090 0.075608902 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
6 Hb_008725_050 0.0756936534 - - syntaxin, putative [Ricinus communis]
7 Hb_000638_280 0.0803530211 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
8 Hb_002686_150 0.0836682007 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_001140_090 0.0848857276 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000866_140 0.085641748 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
11 Hb_006452_180 0.086791275 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
12 Hb_000956_040 0.0882293514 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
13 Hb_009372_020 0.0904516222 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
14 Hb_060094_010 0.0911845535 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
15 Hb_010068_070 0.0914746263 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_002876_210 0.0920701637 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
17 Hb_033152_090 0.093517906 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
18 Hb_000699_210 0.0945497859 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
19 Hb_000711_010 0.0951343879 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
20 Hb_002387_040 0.0971591693 - - protein transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000156_090 Hb_000156_090 Hb_002965_050 Hb_002965_050 Hb_000156_090--Hb_002965_050 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_003428_090 Hb_003428_090 Hb_000156_090--Hb_003428_090 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_002876_210 Hb_002876_210 Hb_002965_050--Hb_002876_210 Hb_002965_050--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010 Hb_003018_030--Hb_002965_050 Hb_000866_140 Hb_000866_140 Hb_003018_030--Hb_000866_140 Hb_004319_050 Hb_004319_050 Hb_003018_030--Hb_004319_050 Hb_000034_110 Hb_000034_110 Hb_003018_030--Hb_000034_110 Hb_003018_030--Hb_003428_090 Hb_002900_120--Hb_002876_210 Hb_002900_120--Hb_000711_010 Hb_003581_280 Hb_003581_280 Hb_002900_120--Hb_003581_280 Hb_004774_020 Hb_004774_020 Hb_002900_120--Hb_004774_020 Hb_003687_120 Hb_003687_120 Hb_003428_090--Hb_003687_120 Hb_003428_090--Hb_060094_010 Hb_003428_090--Hb_000866_140 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_000890_160 Hb_000890_160 Hb_003428_090--Hb_000890_160 Hb_008725_050--Hb_003687_120 Hb_006452_180 Hb_006452_180 Hb_008725_050--Hb_006452_180 Hb_000956_040 Hb_000956_040 Hb_008725_050--Hb_000956_040 Hb_008725_050--Hb_000890_160 Hb_008725_050--Hb_003428_090 Hb_000045_260 Hb_000045_260 Hb_000638_280--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_000638_280--Hb_002897_050 Hb_000699_210 Hb_000699_210 Hb_000638_280--Hb_000699_210 Hb_011631_010 Hb_011631_010 Hb_000638_280--Hb_011631_010 Hb_000796_120 Hb_000796_120 Hb_000638_280--Hb_000796_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.66781 43.8066 37.2001 28.282 7.42824 9.76902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.80146 12.526 13.8145 18.8249 16.6889

CAGE analysis