Hb_000156_100

Information

Type -
Description -
Location Contig156: 90984-93038
Sequence    

Annotation

kegg
ID rcu:RCOM_0632970
description RNA binding protein, putative
nr
ID XP_012072095.1
description PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
swissprot
ID P0A3U1
description Group II intron-encoded protein LtrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ltrA PE=1 SV=1
trembl
ID A0A067KSH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04606 PE=4 SV=1
Gene Ontology
ID GO:0005739
description uncharacterized mitochondrial protein ymf11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13536: 92437-92666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_100 0.0 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
2 Hb_000836_080 0.087591592 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
3 Hb_010710_040 0.0878005378 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_002794_030 0.0914758748 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
5 Hb_000983_100 0.0931965096 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
6 Hb_000836_070 0.0950998243 - - protein binding protein, putative [Ricinus communis]
7 Hb_007229_060 0.0958906425 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
8 Hb_003943_030 0.1003637264 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
9 Hb_131864_040 0.1007209245 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
10 Hb_000923_070 0.101692196 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008085_040 0.1024469502 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
12 Hb_006846_110 0.102568537 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
13 Hb_000223_150 0.1045203261 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
14 Hb_001959_160 0.1083007041 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
15 Hb_000671_150 0.1124919747 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
16 Hb_003018_190 0.1135958043 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
17 Hb_000091_090 0.1152862453 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
18 Hb_002392_040 0.1183909529 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008453_090 0.1187839207 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
20 Hb_001587_020 0.1188048159 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]

Gene co-expression network

sample Hb_000156_100 Hb_000156_100 Hb_000836_080 Hb_000836_080 Hb_000156_100--Hb_000836_080 Hb_010710_040 Hb_010710_040 Hb_000156_100--Hb_010710_040 Hb_002794_030 Hb_002794_030 Hb_000156_100--Hb_002794_030 Hb_000983_100 Hb_000983_100 Hb_000156_100--Hb_000983_100 Hb_000836_070 Hb_000836_070 Hb_000156_100--Hb_000836_070 Hb_007229_060 Hb_007229_060 Hb_000156_100--Hb_007229_060 Hb_006846_110 Hb_006846_110 Hb_000836_080--Hb_006846_110 Hb_003943_030 Hb_003943_030 Hb_000836_080--Hb_003943_030 Hb_001338_040 Hb_001338_040 Hb_000836_080--Hb_001338_040 Hb_131864_040 Hb_131864_040 Hb_000836_080--Hb_131864_040 Hb_007747_200 Hb_007747_200 Hb_000836_080--Hb_007747_200 Hb_000997_400 Hb_000997_400 Hb_010710_040--Hb_000997_400 Hb_010710_040--Hb_000836_070 Hb_003018_190 Hb_003018_190 Hb_010710_040--Hb_003018_190 Hb_000457_150 Hb_000457_150 Hb_010710_040--Hb_000457_150 Hb_010710_040--Hb_006846_110 Hb_002794_030--Hb_007229_060 Hb_000671_150 Hb_000671_150 Hb_002794_030--Hb_000671_150 Hb_002794_030--Hb_000983_100 Hb_000196_090 Hb_000196_090 Hb_002794_030--Hb_000196_090 Hb_002527_070 Hb_002527_070 Hb_002794_030--Hb_002527_070 Hb_000983_100--Hb_007229_060 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_026988_020 Hb_026988_020 Hb_000983_100--Hb_026988_020 Hb_000983_100--Hb_002527_070 Hb_005488_010 Hb_005488_010 Hb_000836_070--Hb_005488_010 Hb_004899_320 Hb_004899_320 Hb_000836_070--Hb_004899_320 Hb_000923_070 Hb_000923_070 Hb_000836_070--Hb_000923_070 Hb_008453_090 Hb_008453_090 Hb_000836_070--Hb_008453_090 Hb_000836_070--Hb_003018_190 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_000861_040 Hb_000861_040 Hb_007229_060--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_007229_060--Hb_002326_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63994 4.48136 0.49102 1.12846 5.27672 10.5112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7968 12.5621 16.939 3.11852 1.05693

CAGE analysis