Hb_000156_110

Information

Type -
Description -
Location Contig156: 95486-95941
Sequence    

Annotation

kegg
ID tcc:TCM_029490
description hypothetical protein
nr
ID XP_007025086.1
description Uncharacterized protein TCM_029490 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GE86
description Uncharacterized protein OS=Theobroma cacao GN=TCM_029490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13538: 95255-95953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_110 0.0 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
2 Hb_002835_310 0.0574465533 - - ATP binding protein, putative [Ricinus communis]
3 Hb_004635_120 0.0644578189 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
4 Hb_002609_120 0.0659989564 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
5 Hb_001638_200 0.0715293027 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
6 Hb_032920_020 0.0735625186 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_000000_390 0.0787692226 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
8 Hb_011472_030 0.0830603463 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
9 Hb_009486_050 0.0853810284 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
10 Hb_000020_090 0.0893115484 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
11 Hb_000009_270 0.0902853528 - - Calmodulin, putative [Ricinus communis]
12 Hb_001516_010 0.0907362025 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
13 Hb_000722_030 0.0919722688 - - putative plant disease resistance family protein [Populus trichocarpa]
14 Hb_001148_110 0.0941289796 - - -
15 Hb_051663_010 0.0943963805 - - receptor-kinase, putative [Ricinus communis]
16 Hb_084303_010 0.0948822209 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000922_200 0.0954580882 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
18 Hb_001080_190 0.0968996892 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
19 Hb_001079_060 0.097596802 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
20 Hb_002066_110 0.097996925 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000156_110 Hb_000156_110 Hb_002835_310 Hb_002835_310 Hb_000156_110--Hb_002835_310 Hb_004635_120 Hb_004635_120 Hb_000156_110--Hb_004635_120 Hb_002609_120 Hb_002609_120 Hb_000156_110--Hb_002609_120 Hb_001638_200 Hb_001638_200 Hb_000156_110--Hb_001638_200 Hb_032920_020 Hb_032920_020 Hb_000156_110--Hb_032920_020 Hb_000000_390 Hb_000000_390 Hb_000156_110--Hb_000000_390 Hb_002391_030 Hb_002391_030 Hb_002835_310--Hb_002391_030 Hb_000424_130 Hb_000424_130 Hb_002835_310--Hb_000424_130 Hb_001516_010 Hb_001516_010 Hb_002835_310--Hb_001516_010 Hb_007545_070 Hb_007545_070 Hb_002835_310--Hb_007545_070 Hb_003938_230 Hb_003938_230 Hb_002835_310--Hb_003938_230 Hb_004635_120--Hb_001638_200 Hb_012395_240 Hb_012395_240 Hb_004635_120--Hb_012395_240 Hb_000538_090 Hb_000538_090 Hb_004635_120--Hb_000538_090 Hb_004635_120--Hb_000000_390 Hb_004635_120--Hb_032920_020 Hb_000009_270 Hb_000009_270 Hb_002609_120--Hb_000009_270 Hb_002609_120--Hb_032920_020 Hb_002609_120--Hb_001638_200 Hb_009486_050 Hb_009486_050 Hb_002609_120--Hb_009486_050 Hb_001021_120 Hb_001021_120 Hb_002609_120--Hb_001021_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_001638_200--Hb_000009_270 Hb_001638_200--Hb_032920_020 Hb_001674_010 Hb_001674_010 Hb_032920_020--Hb_001674_010 Hb_032920_020--Hb_000009_270 Hb_000028_190 Hb_000028_190 Hb_032920_020--Hb_000028_190 Hb_002150_090 Hb_002150_090 Hb_032920_020--Hb_002150_090 Hb_000000_390--Hb_000538_090 Hb_051663_010 Hb_051663_010 Hb_000000_390--Hb_051663_010 Hb_000000_390--Hb_012395_240 Hb_002078_330 Hb_002078_330 Hb_000000_390--Hb_002078_330 Hb_000000_390--Hb_001638_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.71416 85.6017 65.1914 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156836 0.369581 0.20444 5.06883 65.9859

CAGE analysis