Hb_000156_130

Information

Type -
Description -
Location Contig156: 109606-111938
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012647mg
description hypothetical protein
nr
ID KDP37962.1
description hypothetical protein JCGZ_04605 [Jatropha curcas]
swissprot
ID Q8L9S1
description 60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2
trembl
ID A0A067KP95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04605 PE=4 SV=1
Gene Ontology
ID GO:0005623
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13539: 109475-111852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_130 0.0 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
2 Hb_002307_030 0.077237056 - - 40S ribosomal protein S15D [Hevea brasiliensis]
3 Hb_002374_160 0.0834740332 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
4 Hb_143813_010 0.0909267097 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
5 Hb_002374_490 0.0921706741 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001477_130 0.0924322358 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
7 Hb_001454_140 0.0931719326 - - protein arginine n-methyltransferase, putative [Ricinus communis]
8 Hb_004374_200 0.0937521071 - - putative GMP synthase [Oxybasis rubra]
9 Hb_142898_010 0.0975295833 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002259_030 0.0998124286 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011828_020 0.1019792642 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
12 Hb_001243_050 0.1029972937 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
13 Hb_002762_060 0.1034479482 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
14 Hb_000923_020 0.1035032793 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
15 Hb_000510_090 0.1051118627 - - 40S ribosomal protein S15 [Morus notabilis]
16 Hb_003551_020 0.1066937731 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
17 Hb_028486_040 0.1068272241 - - 40S ribosomal protein S14, putative [Ricinus communis]
18 Hb_002311_350 0.1068778447 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
19 Hb_003777_270 0.1069792318 - - 60S ribosomal protein L3B [Hevea brasiliensis]
20 Hb_000787_110 0.1082655017 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000156_130 Hb_000156_130 Hb_002307_030 Hb_002307_030 Hb_000156_130--Hb_002307_030 Hb_002374_160 Hb_002374_160 Hb_000156_130--Hb_002374_160 Hb_143813_010 Hb_143813_010 Hb_000156_130--Hb_143813_010 Hb_002374_490 Hb_002374_490 Hb_000156_130--Hb_002374_490 Hb_001477_130 Hb_001477_130 Hb_000156_130--Hb_001477_130 Hb_001454_140 Hb_001454_140 Hb_000156_130--Hb_001454_140 Hb_001243_050 Hb_001243_050 Hb_002307_030--Hb_001243_050 Hb_002307_030--Hb_002374_490 Hb_023732_070 Hb_023732_070 Hb_002307_030--Hb_023732_070 Hb_002311_350 Hb_002311_350 Hb_002307_030--Hb_002311_350 Hb_000977_080 Hb_000977_080 Hb_002307_030--Hb_000977_080 Hb_004128_190 Hb_004128_190 Hb_002374_160--Hb_004128_190 Hb_000245_130 Hb_000245_130 Hb_002374_160--Hb_000245_130 Hb_000398_180 Hb_000398_180 Hb_002374_160--Hb_000398_180 Hb_002374_160--Hb_001454_140 Hb_000720_120 Hb_000720_120 Hb_002374_160--Hb_000720_120 Hb_002232_170 Hb_002232_170 Hb_002374_160--Hb_002232_170 Hb_007747_090 Hb_007747_090 Hb_143813_010--Hb_007747_090 Hb_000510_090 Hb_000510_090 Hb_143813_010--Hb_000510_090 Hb_001246_100 Hb_001246_100 Hb_143813_010--Hb_001246_100 Hb_003120_060 Hb_003120_060 Hb_143813_010--Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_143813_010--Hb_000019_230 Hb_001221_230 Hb_001221_230 Hb_143813_010--Hb_001221_230 Hb_004297_100 Hb_004297_100 Hb_002374_490--Hb_004297_100 Hb_024835_030 Hb_024835_030 Hb_002374_490--Hb_024835_030 Hb_004645_050 Hb_004645_050 Hb_002374_490--Hb_004645_050 Hb_002374_490--Hb_007747_090 Hb_004223_280 Hb_004223_280 Hb_001477_130--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_001477_130--Hb_002685_170 Hb_002137_020 Hb_002137_020 Hb_001477_130--Hb_002137_020 Hb_011828_020 Hb_011828_020 Hb_001477_130--Hb_011828_020 Hb_001477_130--Hb_000720_120 Hb_005357_030 Hb_005357_030 Hb_001477_130--Hb_005357_030 Hb_001454_140--Hb_001246_100 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.3618 25.8076 5.09498 11.7152 31.9852 65.656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.2878 63.0297 30.9363 19.4664 5.95556

CAGE analysis