Hb_000156_140

Information

Type -
Description -
Location Contig156: 113623-116759
Sequence    

Annotation

kegg
ID tcc:TCM_001988
description Ribosomal protein L18ae/LX family protein
nr
ID XP_007048983.1
description Ribosomal protein L18ae/LX family protein [Theobroma cacao]
swissprot
ID Q9ATF5
description 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1
trembl
ID A0A061DKF5
description 60S ribosomal protein L18a OS=Theobroma cacao GN=TCM_001988 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13540: 113485-116702 , PASA_asmbl_13541: 114468-114846
cDNA
(Sanger)
(ID:Location)		 029_A04.ab1: 113489-116388 , 048_D08.ab1: 113485-116633

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_140 0.0 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
2 Hb_009411_020 0.0578280202 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
3 Hb_002774_070 0.0728554568 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
4 Hb_000165_030 0.0807510834 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
5 Hb_000175_390 0.08567642 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
6 Hb_004204_200 0.0870579806 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
7 Hb_000997_020 0.0905521018 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
8 Hb_024714_020 0.0915882691 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000072_140 0.0919777773 - - -
10 Hb_000905_190 0.0920900314 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
11 Hb_003044_100 0.092632282 - - hypothetical protein F383_08446 [Gossypium arboreum]
12 Hb_000749_150 0.0933283726 - - -
13 Hb_004198_010 0.0961025054 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
14 Hb_109842_010 0.0962592764 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
15 Hb_000803_110 0.0968765966 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
16 Hb_000290_020 0.0976877467 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
17 Hb_000088_200 0.0993271956 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
18 Hb_000012_020 0.0998364186 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
19 Hb_175612_010 0.0999398073 transcription factor TF Family: MBF1 orf [Ricinus communis]
20 Hb_004852_030 0.1014483312 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]

Gene co-expression network

sample Hb_000156_140 Hb_000156_140 Hb_009411_020 Hb_009411_020 Hb_000156_140--Hb_009411_020 Hb_002774_070 Hb_002774_070 Hb_000156_140--Hb_002774_070 Hb_000165_030 Hb_000165_030 Hb_000156_140--Hb_000165_030 Hb_000175_390 Hb_000175_390 Hb_000156_140--Hb_000175_390 Hb_004204_200 Hb_004204_200 Hb_000156_140--Hb_004204_200 Hb_000997_020 Hb_000997_020 Hb_000156_140--Hb_000997_020 Hb_001616_090 Hb_001616_090 Hb_009411_020--Hb_001616_090 Hb_009411_020--Hb_002774_070 Hb_024714_020 Hb_024714_020 Hb_009411_020--Hb_024714_020 Hb_001969_040 Hb_001969_040 Hb_009411_020--Hb_001969_040 Hb_000186_280 Hb_000186_280 Hb_009411_020--Hb_000186_280 Hb_005432_010 Hb_005432_010 Hb_002774_070--Hb_005432_010 Hb_033312_140 Hb_033312_140 Hb_002774_070--Hb_033312_140 Hb_002475_050 Hb_002475_050 Hb_002774_070--Hb_002475_050 Hb_000749_150 Hb_000749_150 Hb_002774_070--Hb_000749_150 Hb_000162_090 Hb_000162_090 Hb_000165_030--Hb_000162_090 Hb_000165_030--Hb_000749_150 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000165_030--Hb_000905_190 Hb_109842_010 Hb_109842_010 Hb_000165_030--Hb_109842_010 Hb_004102_100 Hb_004102_100 Hb_000175_390--Hb_004102_100 Hb_000088_200 Hb_000088_200 Hb_000175_390--Hb_000088_200 Hb_000175_390--Hb_009411_020 Hb_004044_020 Hb_004044_020 Hb_000175_390--Hb_004044_020 Hb_007534_040 Hb_007534_040 Hb_000175_390--Hb_007534_040 Hb_004204_200--Hb_000749_150 Hb_001741_140 Hb_001741_140 Hb_004204_200--Hb_001741_140 Hb_010128_130 Hb_010128_130 Hb_004204_200--Hb_010128_130 Hb_001221_230 Hb_001221_230 Hb_004204_200--Hb_001221_230 Hb_004204_200--Hb_000905_190 Hb_000349_060 Hb_000349_060 Hb_004204_200--Hb_000349_060 Hb_000997_020--Hb_001741_140 Hb_000997_020--Hb_002997_170 Hb_000997_020--Hb_000905_190 Hb_143629_010 Hb_143629_010 Hb_000997_020--Hb_143629_010 Hb_005928_060 Hb_005928_060 Hb_000997_020--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000997_020--Hb_003453_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
551.066 147.798 242.925 159.523 580.344 808.676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
256.083 360.704 287.479 108.289 71.063

CAGE analysis