Hb_000156_240

Information

Type -
Description -
Location Contig156: 221185-231235
Sequence    

Annotation

kegg
ID mpr:MPER_07741
description hypothetical protein
nr
ID XP_002392647.1
description hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
swissprot
ID -
description -
trembl
ID A0A0D9V1C6
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13548: 180120-229939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_240 0.0 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
2 Hb_103465_010 0.0829369661 - - RNA polymerase beta subunit [Hevea brasiliensis]
3 Hb_001083_040 0.0840039197 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
4 Hb_004542_030 0.0982682902 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
5 Hb_002027_420 0.1013798267 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
6 Hb_031194_010 0.1029848712 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
7 Hb_004811_010 0.1071979996 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
8 Hb_003693_020 0.1113915266 - - Ycf1, partial (chloroplast) [Clusia rosea]
9 Hb_151890_020 0.1204241727 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
10 Hb_003963_040 0.1212745684 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
11 Hb_001135_190 0.1214422389 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
12 Hb_001674_050 0.1223308046 - - cytochrome b6 (chloroplast) [Apios americana]
13 Hb_001338_080 0.122642657 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
14 Hb_051924_010 0.1226531067 - - BnaA01g34100D [Brassica napus]
15 Hb_003693_060 0.123013118 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
16 Hb_088080_040 0.127180032 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
17 Hb_106552_030 0.1280571181 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
18 Hb_185274_010 0.1292959468 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
19 Hb_007645_060 0.1293704609 - - cytochrome f [Hevea brasiliensis]
20 Hb_019253_040 0.1298470927 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000156_240 Hb_000156_240 Hb_103465_010 Hb_103465_010 Hb_000156_240--Hb_103465_010 Hb_001083_040 Hb_001083_040 Hb_000156_240--Hb_001083_040 Hb_004542_030 Hb_004542_030 Hb_000156_240--Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_000156_240--Hb_002027_420 Hb_031194_010 Hb_031194_010 Hb_000156_240--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_000156_240--Hb_004811_010 Hb_003693_060 Hb_003693_060 Hb_103465_010--Hb_003693_060 Hb_103465_010--Hb_001083_040 Hb_103465_010--Hb_004811_010 Hb_103465_010--Hb_031194_010 Hb_103465_010--Hb_004542_030 Hb_001083_040--Hb_004542_030 Hb_001135_190 Hb_001135_190 Hb_001083_040--Hb_001135_190 Hb_185274_020 Hb_185274_020 Hb_001083_040--Hb_185274_020 Hb_001674_050 Hb_001674_050 Hb_001083_040--Hb_001674_050 Hb_004542_030--Hb_002027_420 Hb_004542_030--Hb_001135_190 Hb_004542_030--Hb_004811_010 Hb_000832_050 Hb_000832_050 Hb_004542_030--Hb_000832_050 Hb_001951_040 Hb_001951_040 Hb_002027_420--Hb_001951_040 Hb_007122_010 Hb_007122_010 Hb_002027_420--Hb_007122_010 Hb_003362_050 Hb_003362_050 Hb_002027_420--Hb_003362_050 Hb_002027_420--Hb_001135_190 Hb_088080_040 Hb_088080_040 Hb_031194_010--Hb_088080_040 Hb_031194_010--Hb_003693_060 Hb_031194_010--Hb_004811_010 Hb_007645_060 Hb_007645_060 Hb_031194_010--Hb_007645_060 Hb_001338_170 Hb_001338_170 Hb_031194_010--Hb_001338_170 Hb_004811_010--Hb_007645_060 Hb_004811_010--Hb_088080_040 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_149598_010 Hb_149598_010 Hb_004811_010--Hb_149598_010 Hb_151890_020 Hb_151890_020 Hb_004811_010--Hb_151890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.817788 1.1726 10.3566 3.47041 1.11742 1.27254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.294262 0.132266 0.737013 0.212057 84.8506

CAGE analysis