Hb_000157_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig157: 3931-9058
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID XP_012065700.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID A0A067L8J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13669: 9027-9442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_152439_020 0.1046322125 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
3 Hb_010417_020 0.1181035309 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
4 Hb_001153_220 0.1272151713 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
5 Hb_001856_020 0.1275759904 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
6 Hb_024952_010 0.1276244694 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
7 Hb_011457_170 0.1283177211 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
8 Hb_001959_160 0.1285967227 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
9 Hb_008085_040 0.1290111053 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
10 Hb_003497_030 0.1291396756 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_002498_060 0.1292996158 - - ATP binding protein, putative [Ricinus communis]
12 Hb_007161_010 0.1300009361 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
13 Hb_000861_040 0.130121646 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
14 Hb_001396_230 0.1305991909 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
15 Hb_000983_100 0.1312221366 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
16 Hb_143629_090 0.132657101 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
17 Hb_064997_010 0.132673193 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
18 Hb_000753_130 0.1347601344 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
19 Hb_002290_040 0.1351427455 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003408_030 0.1357193089 - - PREDICTED: protein YIF1B [Jatropha curcas]

Gene co-expression network

sample Hb_000157_010 Hb_000157_010 Hb_152439_020 Hb_152439_020 Hb_000157_010--Hb_152439_020 Hb_010417_020 Hb_010417_020 Hb_000157_010--Hb_010417_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_001856_020 Hb_001856_020 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010 Hb_011457_170 Hb_011457_170 Hb_000157_010--Hb_011457_170 Hb_000193_250 Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_004306_060 Hb_004306_060 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_010417_020--Hb_011457_170 Hb_094744_010 Hb_094744_010 Hb_010417_020--Hb_094744_010 Hb_006594_020 Hb_006594_020 Hb_010417_020--Hb_006594_020 Hb_010589_040 Hb_010589_040 Hb_010417_020--Hb_010589_040 Hb_004453_140 Hb_004453_140 Hb_010417_020--Hb_004453_140 Hb_025214_130 Hb_025214_130 Hb_001153_220--Hb_025214_130 Hb_064997_010 Hb_064997_010 Hb_001153_220--Hb_064997_010 Hb_001959_160 Hb_001959_160 Hb_001153_220--Hb_001959_160 Hb_001153_220--Hb_024952_010 Hb_002290_040 Hb_002290_040 Hb_001153_220--Hb_002290_040 Hb_023292_010 Hb_023292_010 Hb_001153_220--Hb_023292_010 Hb_000179_050 Hb_000179_050 Hb_001856_020--Hb_000179_050 Hb_001856_020--Hb_000193_250 Hb_000056_100 Hb_000056_100 Hb_001856_020--Hb_000056_100 Hb_000124_020 Hb_000124_020 Hb_001856_020--Hb_000124_020 Hb_001123_230 Hb_001123_230 Hb_001856_020--Hb_001123_230 Hb_001396_230 Hb_001396_230 Hb_024952_010--Hb_001396_230 Hb_001606_070 Hb_001606_070 Hb_024952_010--Hb_001606_070 Hb_005779_100 Hb_005779_100 Hb_024952_010--Hb_005779_100 Hb_002352_010 Hb_002352_010 Hb_024952_010--Hb_002352_010 Hb_000861_040 Hb_000861_040 Hb_024952_010--Hb_000861_040 Hb_001488_100 Hb_001488_100 Hb_011457_170--Hb_001488_100 Hb_001946_320 Hb_001946_320 Hb_011457_170--Hb_001946_320 Hb_011457_170--Hb_004453_140 Hb_005000_290 Hb_005000_290 Hb_011457_170--Hb_005000_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.727665 0.117281 0.0678168 0.225951 0.696731 0.905734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.672203 1.1636 2.20694 0.413808 0.0372664

CAGE analysis