Hb_000157_020

Information

Type -
Description -
Location Contig157: 11302-12846
Sequence    

Annotation

kegg
ID rcu:RCOM_0965260
description hypothetical protein
nr
ID XP_002517797.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVM8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0965260 PE=4 SV=1
Gene Ontology
ID GO:0005618
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13671: 11246-13042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000506_050 0.0907730892 - - PREDICTED: thymidine kinase [Jatropha curcas]
3 Hb_000890_120 0.0963329853 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
4 Hb_000339_050 0.098109048 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
5 Hb_000086_510 0.1032141646 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
6 Hb_165110_010 0.1049561132 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
7 Hb_085829_010 0.1188178681 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
8 Hb_000805_270 0.1195121824 - - PREDICTED: expansin-A4 [Gossypium raimondii]
9 Hb_005916_040 0.1237895526 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
10 Hb_001616_100 0.1272062038 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
11 Hb_000320_240 0.1285503851 - - multicopper oxidase, putative [Ricinus communis]
12 Hb_002304_100 0.1325104359 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
13 Hb_000243_340 0.1329933015 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
14 Hb_002601_040 0.1374965813 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
15 Hb_110631_010 0.138859917 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
16 Hb_000062_280 0.1405754603 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
17 Hb_001141_440 0.1439366462 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
18 Hb_001052_020 0.1445931467 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
19 Hb_163989_010 0.1497389064 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001025_100 0.1501119979 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000157_020 Hb_000157_020 Hb_000506_050 Hb_000506_050 Hb_000157_020--Hb_000506_050 Hb_000890_120 Hb_000890_120 Hb_000157_020--Hb_000890_120 Hb_000339_050 Hb_000339_050 Hb_000157_020--Hb_000339_050 Hb_000086_510 Hb_000086_510 Hb_000157_020--Hb_000086_510 Hb_165110_010 Hb_165110_010 Hb_000157_020--Hb_165110_010 Hb_085829_010 Hb_085829_010 Hb_000157_020--Hb_085829_010 Hb_000506_050--Hb_000339_050 Hb_000506_050--Hb_165110_010 Hb_000805_270 Hb_000805_270 Hb_000506_050--Hb_000805_270 Hb_000062_280 Hb_000062_280 Hb_000506_050--Hb_000062_280 Hb_004357_030 Hb_004357_030 Hb_000506_050--Hb_004357_030 Hb_000890_120--Hb_000086_510 Hb_000890_120--Hb_085829_010 Hb_002900_180 Hb_002900_180 Hb_000890_120--Hb_002900_180 Hb_000017_250 Hb_000017_250 Hb_000890_120--Hb_000017_250 Hb_004705_060 Hb_004705_060 Hb_000890_120--Hb_004705_060 Hb_000339_050--Hb_000805_270 Hb_000339_050--Hb_004357_030 Hb_002304_100 Hb_002304_100 Hb_000339_050--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000339_050--Hb_002601_040 Hb_000086_510--Hb_085829_010 Hb_000334_090 Hb_000334_090 Hb_000086_510--Hb_000334_090 Hb_000086_510--Hb_165110_010 Hb_000320_240 Hb_000320_240 Hb_000086_510--Hb_000320_240 Hb_000243_340 Hb_000243_340 Hb_000086_510--Hb_000243_340 Hb_001052_020 Hb_001052_020 Hb_165110_010--Hb_001052_020 Hb_165110_010--Hb_000062_280 Hb_165110_010--Hb_000320_240 Hb_085829_010--Hb_004705_060 Hb_085829_010--Hb_000334_090 Hb_085829_010--Hb_000017_250 Hb_001213_060 Hb_001213_060 Hb_085829_010--Hb_001213_060 Hb_000853_250 Hb_000853_250 Hb_085829_010--Hb_000853_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.789743 11.004 98.821 260.067 0.329798 0.851956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.860303 1.89477 2.19732 53.1544 9.14736

CAGE analysis