Hb_000157_030

Information

Type -
Description -
Location Contig157: 14590-18679
Sequence    

Annotation

kegg
ID rcu:RCOM_0965250
description flavohemoprotein B5/b5r, putative
nr
ID XP_012065594.1
description PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
swissprot
ID Q9LXD1
description Cytochrome b5 domain-containing protein RLF OS=Arabidopsis thaliana GN=RLF PE=2 SV=1
trembl
ID A0A067L554
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16844 PE=3 SV=1
Gene Ontology
ID GO:0005829
description reduced lateral root formation isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13675: 16846-17983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_030 0.0 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
2 Hb_010691_060 0.0706250081 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
3 Hb_001766_150 0.0806219665 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
4 Hb_002107_160 0.0810486238 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
5 Hb_002391_300 0.0860144809 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
6 Hb_004440_050 0.0868240078 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
7 Hb_003266_050 0.0870962848 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
8 Hb_001789_240 0.0881771165 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
9 Hb_000373_240 0.088210411 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
10 Hb_000189_340 0.0898466399 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
11 Hb_010608_010 0.092168603 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
12 Hb_001047_100 0.0944357472 - - 40S ribosomal protein S18, putative [Ricinus communis]
13 Hb_003106_130 0.0960147531 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
14 Hb_029921_040 0.09704142 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000099_240 0.0972584721 - - 60S ribosomal protein L7a, putative [Ricinus communis]
16 Hb_012092_010 0.097365443 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
17 Hb_002081_130 0.0988096313 - - serine carboxypeptidase, putative [Ricinus communis]
18 Hb_001054_130 0.0991484684 - - Protein SSU72, putative [Ricinus communis]
19 Hb_000205_160 0.1004497794 - - Peroxisome biogenesis protein 12 [Morus notabilis]
20 Hb_000349_060 0.1005632778 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000157_030 Hb_000157_030 Hb_010691_060 Hb_010691_060 Hb_000157_030--Hb_010691_060 Hb_001766_150 Hb_001766_150 Hb_000157_030--Hb_001766_150 Hb_002107_160 Hb_002107_160 Hb_000157_030--Hb_002107_160 Hb_002391_300 Hb_002391_300 Hb_000157_030--Hb_002391_300 Hb_004440_050 Hb_004440_050 Hb_000157_030--Hb_004440_050 Hb_003266_050 Hb_003266_050 Hb_000157_030--Hb_003266_050 Hb_010691_060--Hb_001766_150 Hb_010691_060--Hb_003266_050 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_010691_060--Hb_002391_300 Hb_003058_130 Hb_003058_130 Hb_010691_060--Hb_003058_130 Hb_000189_340 Hb_000189_340 Hb_001766_150--Hb_000189_340 Hb_001047_100 Hb_001047_100 Hb_001766_150--Hb_001047_100 Hb_003044_100 Hb_003044_100 Hb_001766_150--Hb_003044_100 Hb_105386_010 Hb_105386_010 Hb_001766_150--Hb_105386_010 Hb_001158_220 Hb_001158_220 Hb_002107_160--Hb_001158_220 Hb_002107_160--Hb_010691_060 Hb_002495_040 Hb_002495_040 Hb_002107_160--Hb_002495_040 Hb_000120_500 Hb_000120_500 Hb_002107_160--Hb_000120_500 Hb_000465_430 Hb_000465_430 Hb_002107_160--Hb_000465_430 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080 Hb_001369_660 Hb_001369_660 Hb_004440_050--Hb_001369_660 Hb_002411_170 Hb_002411_170 Hb_004440_050--Hb_002411_170 Hb_009767_120 Hb_009767_120 Hb_004440_050--Hb_009767_120 Hb_001604_080 Hb_001604_080 Hb_004440_050--Hb_001604_080 Hb_003874_020 Hb_003874_020 Hb_004440_050--Hb_003874_020 Hb_010180_020 Hb_010180_020 Hb_004440_050--Hb_010180_020 Hb_005389_150 Hb_005389_150 Hb_003266_050--Hb_005389_150 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_001278_110 Hb_001278_110 Hb_003266_050--Hb_001278_110 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003266_050--Hb_003058_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2709 7.90317 10.5868 6.53989 21.882 36.6238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7771 24.3606 10.5879 11.426 5.00081

CAGE analysis