Hb_000157_050

Information

Type -
Description -
Location Contig157: 27951-28196
Sequence    

Annotation

kegg
ID rcu:RCOM_0965010
description hypothetical protein
nr
ID XP_002517792.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVM3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0965010 PE=4 SV=1
Gene Ontology
ID GO:0009611
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001635_010 0.1659059848 - - -
3 Hb_000028_260 0.2033067755 - - hypothetical protein glysoja_041948 [Glycine soja]
4 Hb_001597_050 0.2043688945 - - -
5 Hb_178968_040 0.2133406138 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002228_080 0.2140232411 - - hypothetical protein JCGZ_12924 [Jatropha curcas]
7 Hb_001486_270 0.21831485 - - Ann10 [Manihot esculenta]
8 Hb_017002_010 0.2328714173 - - PREDICTED: expansin-A15-like [Jatropha curcas]
9 Hb_000483_400 0.2338449288 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
10 Hb_000109_230 0.2360339891 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001247_030 0.2373140441 - - -
12 Hb_003058_230 0.2452424326 - - copper ion binding protein, putative [Ricinus communis]
13 Hb_007416_100 0.2480461649 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
14 Hb_000217_010 0.2505706254 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
15 Hb_001489_130 0.2521992225 - - Pectate lyase precursor, putative [Ricinus communis]
16 Hb_004079_050 0.2538310864 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
17 Hb_014720_100 0.2542664327 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
18 Hb_133279_010 0.2546321792 - - spermidine synthase 1, putative [Ricinus communis]
19 Hb_009079_040 0.2546359798 - - BnaA02g30070D [Brassica napus]
20 Hb_001902_200 0.2556880635 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]

Gene co-expression network

sample Hb_000157_050 Hb_000157_050 Hb_001635_010 Hb_001635_010 Hb_000157_050--Hb_001635_010 Hb_000028_260 Hb_000028_260 Hb_000157_050--Hb_000028_260 Hb_001597_050 Hb_001597_050 Hb_000157_050--Hb_001597_050 Hb_178968_040 Hb_178968_040 Hb_000157_050--Hb_178968_040 Hb_002228_080 Hb_002228_080 Hb_000157_050--Hb_002228_080 Hb_001486_270 Hb_001486_270 Hb_000157_050--Hb_001486_270 Hb_017002_010 Hb_017002_010 Hb_001635_010--Hb_017002_010 Hb_014720_100 Hb_014720_100 Hb_001635_010--Hb_014720_100 Hb_002316_010 Hb_002316_010 Hb_001635_010--Hb_002316_010 Hb_000258_060 Hb_000258_060 Hb_001635_010--Hb_000258_060 Hb_000345_060 Hb_000345_060 Hb_001635_010--Hb_000345_060 Hb_001247_030 Hb_001247_030 Hb_000028_260--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_000028_260--Hb_004125_070 Hb_000649_340 Hb_000649_340 Hb_000028_260--Hb_000649_340 Hb_000483_400 Hb_000483_400 Hb_000028_260--Hb_000483_400 Hb_000796_020 Hb_000796_020 Hb_000028_260--Hb_000796_020 Hb_001584_240 Hb_001584_240 Hb_001597_050--Hb_001584_240 Hb_000740_150 Hb_000740_150 Hb_001597_050--Hb_000740_150 Hb_001597_050--Hb_001486_270 Hb_000776_060 Hb_000776_060 Hb_001597_050--Hb_000776_060 Hb_001597_050--Hb_000483_400 Hb_003875_010 Hb_003875_010 Hb_001597_050--Hb_003875_010 Hb_178968_040--Hb_014720_100 Hb_178968_040--Hb_017002_010 Hb_004079_050 Hb_004079_050 Hb_178968_040--Hb_004079_050 Hb_002686_260 Hb_002686_260 Hb_178968_040--Hb_002686_260 Hb_000345_080 Hb_000345_080 Hb_178968_040--Hb_000345_080 Hb_178968_040--Hb_004125_070 Hb_007110_010 Hb_007110_010 Hb_002228_080--Hb_007110_010 Hb_002228_080--Hb_001486_270 Hb_003589_080 Hb_003589_080 Hb_002228_080--Hb_003589_080 Hb_002228_080--Hb_001597_050 Hb_000173_050 Hb_000173_050 Hb_002228_080--Hb_000173_050 Hb_000260_280 Hb_000260_280 Hb_001486_270--Hb_000260_280 Hb_029920_020 Hb_029920_020 Hb_001486_270--Hb_029920_020 Hb_175933_010 Hb_175933_010 Hb_001486_270--Hb_175933_010 Hb_000192_020 Hb_000192_020 Hb_001486_270--Hb_000192_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.593263 0 10.0023 42.6279 0.595344 2.14141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.5946 6.80885 6.58869 0.246016 3.52084

CAGE analysis