Hb_000157_100

Information

Type -
Description -
Location Contig157: 85424-97646
Sequence    

Annotation

kegg
ID pmum:103330674
description cinnamoyl-CoA reductase 1-like
nr
ID KJB40884.1
description hypothetical protein B456_007G083500 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2S995
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G083500 PE=4 SV=1
Gene Ontology
ID GO:0016491
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13681: 85652-85781 , PASA_asmbl_13682: 85921-86090 , PASA_asmbl_13683: 96428-98542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_100 0.0 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
2 Hb_005016_050 0.1384608698 - - -
3 Hb_009117_030 0.1419693309 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
4 Hb_003688_060 0.147463757 - - PREDICTED: histone deacetylase 5 [Jatropha curcas]
5 Hb_001054_130 0.1483120518 - - Protein SSU72, putative [Ricinus communis]
6 Hb_000364_150 0.155946998 - - -
7 Hb_003912_090 0.1609956416 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
8 Hb_003673_060 0.1623882212 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
9 Hb_002197_030 0.1631271207 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
10 Hb_002301_280 0.1649028059 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
11 Hb_002603_080 0.1679591644 - - hypothetical protein MTR_7g114400 [Medicago truncatula]
12 Hb_011671_220 0.1693329691 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000927_020 0.1705965325 - - synaptosomal associated protein, putative [Ricinus communis]
14 Hb_004235_030 0.1709511012 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
15 Hb_000486_010 0.172970937 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
16 Hb_015807_010 0.1742407701 - - hypothetical protein POPTR_0001s44430g [Populus trichocarpa]
17 Hb_007317_180 0.1754993718 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
18 Hb_000963_190 0.176103637 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
19 Hb_137403_010 0.1762030281 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
20 Hb_015057_010 0.1771686642 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]

Gene co-expression network

sample Hb_000157_100 Hb_000157_100 Hb_005016_050 Hb_005016_050 Hb_000157_100--Hb_005016_050 Hb_009117_030 Hb_009117_030 Hb_000157_100--Hb_009117_030 Hb_003688_060 Hb_003688_060 Hb_000157_100--Hb_003688_060 Hb_001054_130 Hb_001054_130 Hb_000157_100--Hb_001054_130 Hb_000364_150 Hb_000364_150 Hb_000157_100--Hb_000364_150 Hb_003912_090 Hb_003912_090 Hb_000157_100--Hb_003912_090 Hb_005016_050--Hb_009117_030 Hb_023732_090 Hb_023732_090 Hb_005016_050--Hb_023732_090 Hb_027472_150 Hb_027472_150 Hb_005016_050--Hb_027472_150 Hb_005016_050--Hb_003912_090 Hb_003333_060 Hb_003333_060 Hb_005016_050--Hb_003333_060 Hb_000193_270 Hb_000193_270 Hb_005016_050--Hb_000193_270 Hb_001266_080 Hb_001266_080 Hb_009117_030--Hb_001266_080 Hb_000889_020 Hb_000889_020 Hb_009117_030--Hb_000889_020 Hb_009117_030--Hb_003333_060 Hb_032458_010 Hb_032458_010 Hb_009117_030--Hb_032458_010 Hb_000166_110 Hb_000166_110 Hb_009117_030--Hb_000166_110 Hb_000617_260 Hb_000617_260 Hb_003688_060--Hb_000617_260 Hb_007317_180 Hb_007317_180 Hb_003688_060--Hb_007317_180 Hb_002027_070 Hb_002027_070 Hb_003688_060--Hb_002027_070 Hb_001279_140 Hb_001279_140 Hb_003688_060--Hb_001279_140 Hb_003688_060--Hb_005016_050 Hb_004055_140 Hb_004055_140 Hb_001054_130--Hb_004055_140 Hb_022461_010 Hb_022461_010 Hb_001054_130--Hb_022461_010 Hb_000157_030 Hb_000157_030 Hb_001054_130--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_001054_130--Hb_003266_050 Hb_000057_200 Hb_000057_200 Hb_001054_130--Hb_000057_200 Hb_001054_130--Hb_009117_030 Hb_002023_020 Hb_002023_020 Hb_000364_150--Hb_002023_020 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_137403_010 Hb_137403_010 Hb_000364_150--Hb_137403_010 Hb_039253_010 Hb_039253_010 Hb_000364_150--Hb_039253_010 Hb_000364_150--Hb_004055_140 Hb_000364_150--Hb_009117_030 Hb_005862_010 Hb_005862_010 Hb_003912_090--Hb_005862_010 Hb_028420_020 Hb_028420_020 Hb_003912_090--Hb_028420_020 Hb_144598_030 Hb_144598_030 Hb_003912_090--Hb_144598_030 Hb_020665_040 Hb_020665_040 Hb_003912_090--Hb_020665_040 Hb_002374_020 Hb_002374_020 Hb_003912_090--Hb_002374_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13841 0.515217 1.66971 1.18675 4.23252 12.0348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.91015 3.95909 3.07064 4.49127 2.87622

CAGE analysis