Hb_000157_120

Information

Type -
Description -
Location Contig157: 105535-111925
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28640g
description POPTRDRAFT_562056; NBS-LRR resistance protein RGH2
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13685: 111475-111648 , PASA_asmbl_13686: 111879-112247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_120 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_100777_010 0.1391939366 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
3 Hb_023226_010 0.1449985313 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
4 Hb_117134_010 0.1464433497 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
5 Hb_000087_020 0.1510901081 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
6 Hb_000496_060 0.1552896783 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
7 Hb_084849_020 0.1553184764 - - ARF GTPase activator, putative [Ricinus communis]
8 Hb_007594_090 0.1565439458 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
9 Hb_000048_050 0.1595647183 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
10 Hb_002214_050 0.1599291958 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
11 Hb_001369_050 0.1604433644 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
12 Hb_005398_030 0.1608373341 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
13 Hb_001135_080 0.1615593007 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
14 Hb_002810_030 0.1619976518 - - hypothetical protein VITISV_015705 [Vitis vinifera]
15 Hb_001587_070 0.1622592872 desease resistance Gene Name: NB-ARC Nbs-lrr resistance protein, putative [Theobroma cacao]
16 Hb_092100_020 0.1634027367 - - strictosidine synthase, putative [Ricinus communis]
17 Hb_001153_060 0.1637090697 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000172_030 0.1644743526 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
19 Hb_001133_020 0.1646279652 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
20 Hb_005375_020 0.164861677 - - PREDICTED: endoribonuclease Dicer homolog 1-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000157_120 Hb_000157_120 Hb_100777_010 Hb_100777_010 Hb_000157_120--Hb_100777_010 Hb_023226_010 Hb_023226_010 Hb_000157_120--Hb_023226_010 Hb_117134_010 Hb_117134_010 Hb_000157_120--Hb_117134_010 Hb_000087_020 Hb_000087_020 Hb_000157_120--Hb_000087_020 Hb_000496_060 Hb_000496_060 Hb_000157_120--Hb_000496_060 Hb_084849_020 Hb_084849_020 Hb_000157_120--Hb_084849_020 Hb_100777_010--Hb_000087_020 Hb_001235_070 Hb_001235_070 Hb_100777_010--Hb_001235_070 Hb_000362_210 Hb_000362_210 Hb_100777_010--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_100777_010--Hb_000333_090 Hb_001369_050 Hb_001369_050 Hb_100777_010--Hb_001369_050 Hb_002259_150 Hb_002259_150 Hb_100777_010--Hb_002259_150 Hb_000144_090 Hb_000144_090 Hb_023226_010--Hb_000144_090 Hb_001133_020 Hb_001133_020 Hb_023226_010--Hb_001133_020 Hb_011161_040 Hb_011161_040 Hb_023226_010--Hb_011161_040 Hb_008173_120 Hb_008173_120 Hb_023226_010--Hb_008173_120 Hb_000032_540 Hb_000032_540 Hb_023226_010--Hb_000032_540 Hb_000048_050 Hb_000048_050 Hb_023226_010--Hb_000048_050 Hb_005398_030 Hb_005398_030 Hb_117134_010--Hb_005398_030 Hb_117134_010--Hb_000496_060 Hb_000061_320 Hb_000061_320 Hb_117134_010--Hb_000061_320 Hb_001833_110 Hb_001833_110 Hb_117134_010--Hb_001833_110 Hb_005432_030 Hb_005432_030 Hb_117134_010--Hb_005432_030 Hb_071130_030 Hb_071130_030 Hb_117134_010--Hb_071130_030 Hb_000024_080 Hb_000024_080 Hb_000087_020--Hb_000024_080 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_000087_020--Hb_005398_030 Hb_004032_100 Hb_004032_100 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_000025_120 Hb_000025_120 Hb_000496_060--Hb_000025_120 Hb_000496_060--Hb_005432_030 Hb_003175_040 Hb_003175_040 Hb_000496_060--Hb_003175_040 Hb_014720_080 Hb_014720_080 Hb_000496_060--Hb_014720_080 Hb_000496_060--Hb_001833_110 Hb_084849_020--Hb_001369_050 Hb_001718_100 Hb_001718_100 Hb_084849_020--Hb_001718_100 Hb_005686_110 Hb_005686_110 Hb_084849_020--Hb_005686_110 Hb_003050_230 Hb_003050_230 Hb_084849_020--Hb_003050_230 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_084849_020--Hb_000362_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.685145 0.144729 0.215686 0.432451 0.0975486 1.49258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62488 0.97238 1.09233 0.25077 0.266289

CAGE analysis