Hb_000157_140

Information

Type -
Description -
Location Contig157: 116386-166732
Sequence    

Annotation

kegg
ID rcu:RCOM_0964340
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517775.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9RVK6
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964340 PE=4 SV=1
Gene Ontology
ID GO:0045552
description cinnamoyl- reductase 1-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13688: 116758-141039 , PASA_asmbl_13689: 142306-144730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_140 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_004030_060 0.0803891558 - - receptor protein kinase zmpk1, putative [Ricinus communis]
3 Hb_007537_030 0.0896445976 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
4 Hb_007229_050 0.0903546011 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
5 Hb_007317_020 0.0927827097 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
6 Hb_011174_080 0.0934197885 - - PREDICTED: sulfite oxidase [Jatropha curcas]
7 Hb_000570_020 0.0962185625 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
8 Hb_004129_010 0.0963874933 - - aspartate aminotransferase, putative [Ricinus communis]
9 Hb_005854_040 0.0967323534 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001473_170 0.0973580635 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
11 Hb_001235_130 0.1005868541 - - -
12 Hb_004943_040 0.1010637348 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
13 Hb_004326_010 0.1052910128 - - cationic amino acid transporter, putative [Ricinus communis]
14 Hb_002805_090 0.1075837076 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_001951_060 0.1125099766 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
16 Hb_005588_120 0.1133571695 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002687_200 0.1133906069 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010407_030 0.1136216125 - - PREDICTED: casein kinase I-like [Jatropha curcas]
19 Hb_009193_010 0.113845246 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
20 Hb_011671_120 0.1140471881 - - hypothetical protein JCGZ_26275 [Jatropha curcas]

Gene co-expression network

sample Hb_000157_140 Hb_000157_140 Hb_004030_060 Hb_004030_060 Hb_000157_140--Hb_004030_060 Hb_007537_030 Hb_007537_030 Hb_000157_140--Hb_007537_030 Hb_007229_050 Hb_007229_050 Hb_000157_140--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_000157_140--Hb_007317_020 Hb_011174_080 Hb_011174_080 Hb_000157_140--Hb_011174_080 Hb_000570_020 Hb_000570_020 Hb_000157_140--Hb_000570_020 Hb_000683_050 Hb_000683_050 Hb_004030_060--Hb_000683_050 Hb_000494_030 Hb_000494_030 Hb_004030_060--Hb_000494_030 Hb_009535_030 Hb_009535_030 Hb_004030_060--Hb_009535_030 Hb_010390_010 Hb_010390_010 Hb_004030_060--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_004030_060--Hb_005854_040 Hb_007537_030--Hb_000570_020 Hb_007537_030--Hb_004030_060 Hb_018845_010 Hb_018845_010 Hb_007537_030--Hb_018845_010 Hb_021576_070 Hb_021576_070 Hb_007537_030--Hb_021576_070 Hb_004326_010 Hb_004326_010 Hb_007537_030--Hb_004326_010 Hb_006185_030 Hb_006185_030 Hb_007229_050--Hb_006185_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_001235_130 Hb_001235_130 Hb_007229_050--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_007229_050--Hb_098533_010 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_007317_020--Hb_005854_040 Hb_000254_070 Hb_000254_070 Hb_007317_020--Hb_000254_070 Hb_007317_020--Hb_098533_010 Hb_010381_020 Hb_010381_020 Hb_007317_020--Hb_010381_020 Hb_001473_170 Hb_001473_170 Hb_007317_020--Hb_001473_170 Hb_011174_080--Hb_001235_130 Hb_002805_090 Hb_002805_090 Hb_011174_080--Hb_002805_090 Hb_011174_080--Hb_000256_160 Hb_029879_120 Hb_029879_120 Hb_011174_080--Hb_029879_120 Hb_001702_050 Hb_001702_050 Hb_011174_080--Hb_001702_050 Hb_004943_040 Hb_004943_040 Hb_000570_020--Hb_004943_040 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_000283_140 Hb_000283_140 Hb_000570_020--Hb_000283_140 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.772674 6.11905 7.34945 13.0189 1.66805 2.05779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58787 2.31864 1.97052 7.87202 11.7737

CAGE analysis