Hb_000158_100

Information

Type -
Description -
Location Contig158: 273798-275432
Sequence    

Annotation

kegg
ID rcu:RCOM_1765230
description hypothetical protein
nr
ID XP_002513271.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHQ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1765230 PE=4 SV=1
Gene Ontology
ID GO:0005739
description d-lactate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13861: 273820-274810 , PASA_asmbl_13862: 274838-343771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000158_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000743_050 0.0761835716 - - unnamed protein product [Vitis vinifera]
3 Hb_003623_030 0.0769380558 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
4 Hb_000136_060 0.0797182072 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
5 Hb_002028_170 0.0809930593 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
6 Hb_000739_220 0.0847575478 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
7 Hb_001900_110 0.0852941651 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
8 Hb_116929_010 0.0884223107 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
9 Hb_000347_130 0.0884592123 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
10 Hb_011716_020 0.0899833253 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
11 Hb_001034_070 0.090306585 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000613_080 0.091224842 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
13 Hb_102269_010 0.0942068471 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
14 Hb_002551_070 0.0964080934 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
15 Hb_000023_060 0.098807346 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
16 Hb_015099_010 0.0999654613 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
17 Hb_000574_070 0.1003327934 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
18 Hb_002400_240 0.1006924148 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
19 Hb_005494_020 0.1012559747 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
20 Hb_141547_010 0.1019016321 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]

Gene co-expression network

sample Hb_000158_100 Hb_000158_100 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_003623_030 Hb_003623_030 Hb_000158_100--Hb_003623_030 Hb_000136_060 Hb_000136_060 Hb_000158_100--Hb_000136_060 Hb_002028_170 Hb_002028_170 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_000743_050--Hb_000739_220 Hb_000347_130 Hb_000347_130 Hb_000743_050--Hb_000347_130 Hb_001322_210 Hb_001322_210 Hb_000743_050--Hb_001322_210 Hb_081879_030 Hb_081879_030 Hb_000743_050--Hb_081879_030 Hb_025012_010 Hb_025012_010 Hb_000743_050--Hb_025012_010 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_003623_030--Hb_002028_170 Hb_000107_040 Hb_000107_040 Hb_003623_030--Hb_000107_040 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_032631_040 Hb_032631_040 Hb_003623_030--Hb_032631_040 Hb_000136_060--Hb_002028_170 Hb_000136_060--Hb_003623_030 Hb_011716_020 Hb_011716_020 Hb_000136_060--Hb_011716_020 Hb_000136_060--Hb_000743_050 Hb_000136_060--Hb_001900_110 Hb_002028_170--Hb_011716_020 Hb_007904_220 Hb_007904_220 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030 Hb_000739_220--Hb_000347_130 Hb_000739_220--Hb_025012_010 Hb_000739_220--Hb_001322_210 Hb_000613_080 Hb_000613_080 Hb_000739_220--Hb_000613_080 Hb_141547_010 Hb_141547_010 Hb_001900_110--Hb_141547_010 Hb_029142_010 Hb_029142_010 Hb_001900_110--Hb_029142_010 Hb_000997_030 Hb_000997_030 Hb_001900_110--Hb_000997_030 Hb_000023_060 Hb_000023_060 Hb_001900_110--Hb_000023_060 Hb_000236_080 Hb_000236_080 Hb_001900_110--Hb_000236_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3884 12.322 3.2124 7.2793 13.9982 25.5996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.83312 3.51918 6.75955 13.2167 7.60159

CAGE analysis