Hb_000158_130

Information

Type -
Description -
Location Contig158: 343423-344738
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009774mg
description hypothetical protein
nr
ID XP_012089566.1
description PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01654 PE=4 SV=1
Gene Ontology
ID GO:0005739
description duf668 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13862: 274838-343771 , PASA_asmbl_13865: 343788-344864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000158_130 0.0 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
2 Hb_003124_130 0.0621751015 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
3 Hb_000136_090 0.0743087528 - - programmed cell death protein, putative [Ricinus communis]
4 Hb_000375_130 0.0799356431 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
5 Hb_012180_050 0.081262178 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
6 Hb_000098_130 0.0819291252 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
7 Hb_001454_320 0.0822403162 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
8 Hb_005260_040 0.0828628487 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
9 Hb_000796_190 0.0833697618 - - hypothetical protein F383_31148 [Gossypium arboreum]
10 Hb_015099_010 0.084171501 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
11 Hb_009112_010 0.084768009 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
12 Hb_003388_100 0.0861449749 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
13 Hb_000261_290 0.0864512995 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
14 Hb_004899_070 0.0882941644 - - PREDICTED: RRP12-like protein [Jatropha curcas]
15 Hb_008112_030 0.0883117647 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002174_020 0.0887386971 - - ring finger protein, putative [Ricinus communis]
17 Hb_000648_100 0.0898215753 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
18 Hb_006252_020 0.0901574212 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
19 Hb_000215_190 0.0903780807 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
20 Hb_004659_080 0.0908984503 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000158_130 Hb_000158_130 Hb_003124_130 Hb_003124_130 Hb_000158_130--Hb_003124_130 Hb_000136_090 Hb_000136_090 Hb_000158_130--Hb_000136_090 Hb_000375_130 Hb_000375_130 Hb_000158_130--Hb_000375_130 Hb_012180_050 Hb_012180_050 Hb_000158_130--Hb_012180_050 Hb_000098_130 Hb_000098_130 Hb_000158_130--Hb_000098_130 Hb_001454_320 Hb_001454_320 Hb_000158_130--Hb_001454_320 Hb_000567_010 Hb_000567_010 Hb_003124_130--Hb_000567_010 Hb_000796_190 Hb_000796_190 Hb_003124_130--Hb_000796_190 Hb_147737_010 Hb_147737_010 Hb_003124_130--Hb_147737_010 Hb_003124_130--Hb_001454_320 Hb_000160_290 Hb_000160_290 Hb_003124_130--Hb_000160_290 Hb_000136_090--Hb_012180_050 Hb_000363_130 Hb_000363_130 Hb_000136_090--Hb_000363_130 Hb_001028_070 Hb_001028_070 Hb_000136_090--Hb_001028_070 Hb_000300_360 Hb_000300_360 Hb_000136_090--Hb_000300_360 Hb_006252_020 Hb_006252_020 Hb_000136_090--Hb_006252_020 Hb_000120_610 Hb_000120_610 Hb_000136_090--Hb_000120_610 Hb_015099_010 Hb_015099_010 Hb_000375_130--Hb_015099_010 Hb_000088_130 Hb_000088_130 Hb_000375_130--Hb_000088_130 Hb_002392_030 Hb_002392_030 Hb_000375_130--Hb_002392_030 Hb_133047_010 Hb_133047_010 Hb_000375_130--Hb_133047_010 Hb_009112_010 Hb_009112_010 Hb_000375_130--Hb_009112_010 Hb_174821_010 Hb_174821_010 Hb_000375_130--Hb_174821_010 Hb_063716_080 Hb_063716_080 Hb_012180_050--Hb_063716_080 Hb_002960_160 Hb_002960_160 Hb_012180_050--Hb_002960_160 Hb_012180_050--Hb_000098_130 Hb_012180_050--Hb_000796_190 Hb_000261_290 Hb_000261_290 Hb_000098_130--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_000098_130--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000098_130--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_000098_130--Hb_003097_180 Hb_000098_130--Hb_000363_130 Hb_000098_130--Hb_000300_360 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_001454_320--Hb_000160_290 Hb_001454_320--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_001454_320--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.2667 37.7235 17.4812 19.9301 32.8931 45.8115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9696 12.2904 11.0869 24.3614 10.8091

CAGE analysis