Hb_000159_070

Information

Type -
Description -
Location Contig159: 61844-66522
Sequence    

Annotation

kegg
ID tcc:TCM_000667
description Poly(A) binding protein 8
nr
ID BAJ53195.1
description JHL03K20.4 [Jatropha curcas]
swissprot
ID O22173
description Polyadenylate-binding protein 4 OS=Arabidopsis thaliana GN=PAB4 PE=1 SV=1
trembl
ID E6NU85
description Polyadenylate-binding protein OS=Jatropha curcas GN=JHL03K20.4 PE=3 SV=1
Gene Ontology
ID GO:0005737
description polyadenylate-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14111: 61915-63523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000159_070 0.0 - - JHL03K20.4 [Jatropha curcas]
2 Hb_009384_020 0.0818151502 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
3 Hb_076693_040 0.0877256431 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
4 Hb_003988_040 0.0916726778 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
5 Hb_019516_100 0.09298582 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_000172_420 0.0955391991 - - 60S ribosomal protein L30, putative [Ricinus communis]
7 Hb_002897_080 0.103225672 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
8 Hb_000062_390 0.1063028722 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
9 Hb_000270_720 0.1067690188 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
10 Hb_007575_070 0.1076113281 - - Histone H3.2 [Glycine soja]
11 Hb_000365_080 0.1104089409 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
12 Hb_001304_140 0.110471504 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
13 Hb_000042_260 0.1128938182 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
14 Hb_000948_210 0.1142996978 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
15 Hb_000312_090 0.114601436 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
16 Hb_007416_020 0.1155827889 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
17 Hb_007944_040 0.1159811687 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
18 Hb_001221_310 0.1171472696 - - sec61 gamma subunit, putative [Ricinus communis]
19 Hb_001158_230 0.1180859777 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
20 Hb_026398_010 0.118854285 - - hypothetical protein B456_010G132100 [Gossypium raimondii]

Gene co-expression network

sample Hb_000159_070 Hb_000159_070 Hb_009384_020 Hb_009384_020 Hb_000159_070--Hb_009384_020 Hb_076693_040 Hb_076693_040 Hb_000159_070--Hb_076693_040 Hb_003988_040 Hb_003988_040 Hb_000159_070--Hb_003988_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000172_420 Hb_000172_420 Hb_000159_070--Hb_000172_420 Hb_002897_080 Hb_002897_080 Hb_000159_070--Hb_002897_080 Hb_009384_020--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_009384_020--Hb_007944_040 Hb_001158_230 Hb_001158_230 Hb_009384_020--Hb_001158_230 Hb_012753_230 Hb_012753_230 Hb_009384_020--Hb_012753_230 Hb_000042_260 Hb_000042_260 Hb_009384_020--Hb_000042_260 Hb_001304_140 Hb_001304_140 Hb_076693_040--Hb_001304_140 Hb_002391_220 Hb_002391_220 Hb_076693_040--Hb_002391_220 Hb_076693_040--Hb_009384_020 Hb_076693_040--Hb_000172_420 Hb_000270_720 Hb_000270_720 Hb_076693_040--Hb_000270_720 Hb_005463_060 Hb_005463_060 Hb_003988_040--Hb_005463_060 Hb_003607_170 Hb_003607_170 Hb_003988_040--Hb_003607_170 Hb_003988_040--Hb_002897_080 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090 Hb_019516_100--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_019516_100--Hb_002588_010 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_172221_010 Hb_172221_010 Hb_019516_100--Hb_172221_010 Hb_002248_100 Hb_002248_100 Hb_000172_420--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000172_420--Hb_006588_080 Hb_000172_420--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_000172_420--Hb_000635_080 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050 Hb_000526_150 Hb_000526_150 Hb_002897_080--Hb_000526_150 Hb_002897_080--Hb_000312_090 Hb_009851_100 Hb_009851_100 Hb_002897_080--Hb_009851_100 Hb_000617_090 Hb_000617_090 Hb_002897_080--Hb_000617_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8958 3.80859 12.1292 10.0269 10.2418 13.6097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.1465 79.2298 13.7218 6.55119 8.34977

CAGE analysis