Hb_000159_100

Information

Type -
Description -
Location Contig159: 177962-179772
Sequence    

Annotation

kegg
ID rcu:RCOM_1290870
description lactosylceramide 4-alpha-galactosyltransferase, putative
nr
ID XP_012081266.1
description PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
swissprot
ID P0C8Q4
description Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1
trembl
ID A0A067K528
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18104 PE=4 SV=1
Gene Ontology
ID GO:0016740
description lactosylceramide 4-alpha-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14112: 161417-179666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000159_100 0.0 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
2 Hb_000031_110 0.0794778069 - - Coatomer, beta subunit isoform 1 [Theobroma cacao]
3 Hb_000872_010 0.0920718796 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
4 Hb_011310_160 0.0951590713 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
5 Hb_003294_090 0.0963808546 - - conserved hypothetical protein [Ricinus communis]
6 Hb_025193_040 0.0969042143 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
7 Hb_002667_050 0.1059484592 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
8 Hb_000398_120 0.1090003702 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
9 Hb_003747_020 0.1105875049 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
10 Hb_003994_150 0.1118628558 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
11 Hb_000366_200 0.1127716946 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
12 Hb_001440_030 0.1131393991 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
13 Hb_006909_010 0.1137321944 - - 5-oxoprolinase, putative [Ricinus communis]
14 Hb_000264_350 0.1150247227 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
15 Hb_164898_010 0.1161142181 - - Cysteine-rich protein, putative [Theobroma cacao]
16 Hb_006660_010 0.1167810574 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
17 Hb_000110_190 0.1170045384 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
18 Hb_085781_020 0.1176429152 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
19 Hb_002099_080 0.1179809405 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
20 Hb_000066_170 0.1212854392 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000159_100 Hb_000159_100 Hb_000031_110 Hb_000031_110 Hb_000159_100--Hb_000031_110 Hb_000872_010 Hb_000872_010 Hb_000159_100--Hb_000872_010 Hb_011310_160 Hb_011310_160 Hb_000159_100--Hb_011310_160 Hb_003294_090 Hb_003294_090 Hb_000159_100--Hb_003294_090 Hb_025193_040 Hb_025193_040 Hb_000159_100--Hb_025193_040 Hb_002667_050 Hb_002667_050 Hb_000159_100--Hb_002667_050 Hb_000366_200 Hb_000366_200 Hb_000031_110--Hb_000366_200 Hb_000031_110--Hb_000872_010 Hb_000784_070 Hb_000784_070 Hb_000031_110--Hb_000784_070 Hb_000264_350 Hb_000264_350 Hb_000031_110--Hb_000264_350 Hb_001440_030 Hb_001440_030 Hb_000031_110--Hb_001440_030 Hb_000110_190 Hb_000110_190 Hb_000872_010--Hb_000110_190 Hb_000872_010--Hb_001440_030 Hb_000592_030 Hb_000592_030 Hb_000872_010--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000872_010--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_000872_010--Hb_000053_040 Hb_001876_010 Hb_001876_010 Hb_000872_010--Hb_001876_010 Hb_000398_120 Hb_000398_120 Hb_011310_160--Hb_000398_120 Hb_006660_010 Hb_006660_010 Hb_011310_160--Hb_006660_010 Hb_003988_010 Hb_003988_010 Hb_011310_160--Hb_003988_010 Hb_025477_040 Hb_025477_040 Hb_011310_160--Hb_025477_040 Hb_010174_040 Hb_010174_040 Hb_011310_160--Hb_010174_040 Hb_002974_060 Hb_002974_060 Hb_011310_160--Hb_002974_060 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020 Hb_002025_330 Hb_002025_330 Hb_025193_040--Hb_002025_330 Hb_004143_160 Hb_004143_160 Hb_025193_040--Hb_004143_160 Hb_001963_100 Hb_001963_100 Hb_025193_040--Hb_001963_100 Hb_025193_040--Hb_001440_030 Hb_000922_030 Hb_000922_030 Hb_025193_040--Hb_000922_030 Hb_025193_040--Hb_000872_010 Hb_002099_080 Hb_002099_080 Hb_002667_050--Hb_002099_080 Hb_002667_050--Hb_005901_020 Hb_002667_050--Hb_003294_090 Hb_004020_020 Hb_004020_020 Hb_002667_050--Hb_004020_020 Hb_001449_040 Hb_001449_040 Hb_002667_050--Hb_001449_040 Hb_000388_090 Hb_000388_090 Hb_002667_050--Hb_000388_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.95174 6.84798 5.56256 15.403 15.9294 19.3987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.76416 5.28018 17.1428 25.3128 18.3511

CAGE analysis