Hb_000159_130

Information

Type -
Description -
Location Contig159: 198137-199492
Sequence    

Annotation

kegg
ID rcu:RCOM_0986930
description RNA binding protein, putative
nr
ID XP_002530915.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FZ84
description Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana GN=RBG6 PE=2 SV=1
trembl
ID B9SY46
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0986930 PE=4 SV=1
Gene Ontology
ID GO:0005739
description glycine-rich rna-binding protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14122: 193714-199577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000159_130 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_001006_020 0.0792698244 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
3 Hb_001728_060 0.0816198216 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
4 Hb_000289_110 0.0828938457 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
5 Hb_027459_020 0.0956340504 - - phosphoglycerate mutase, putative [Ricinus communis]
6 Hb_000107_150 0.1019440477 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
7 Hb_003020_260 0.1027818245 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
8 Hb_003387_070 0.1048157514 - - Acyl-protein thioesterase, putative [Ricinus communis]
9 Hb_003768_030 0.1070981874 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
10 Hb_002014_030 0.1079060467 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
11 Hb_001195_200 0.1081414235 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
12 Hb_002183_060 0.1082327212 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
13 Hb_001910_010 0.1087122847 - - Dual specificity protein phosphatase, putative [Ricinus communis]
14 Hb_004324_270 0.1089515485 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
15 Hb_000053_020 0.110089484 - - F-box and wd40 domain protein, putative [Ricinus communis]
16 Hb_000483_300 0.1109784836 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
17 Hb_011457_050 0.1111489691 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
18 Hb_002613_020 0.1116502538 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
19 Hb_001366_180 0.1140966785 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
20 Hb_015183_060 0.1148530125 - - hypothetical protein JCGZ_06621 [Jatropha curcas]

Gene co-expression network

sample Hb_000159_130 Hb_000159_130 Hb_001006_020 Hb_001006_020 Hb_000159_130--Hb_001006_020 Hb_001728_060 Hb_001728_060 Hb_000159_130--Hb_001728_060 Hb_000289_110 Hb_000289_110 Hb_000159_130--Hb_000289_110 Hb_027459_020 Hb_027459_020 Hb_000159_130--Hb_027459_020 Hb_000107_150 Hb_000107_150 Hb_000159_130--Hb_000107_150 Hb_003020_260 Hb_003020_260 Hb_000159_130--Hb_003020_260 Hb_001006_020--Hb_000289_110 Hb_005144_050 Hb_005144_050 Hb_001006_020--Hb_005144_050 Hb_001366_180 Hb_001366_180 Hb_001006_020--Hb_001366_180 Hb_002183_060 Hb_002183_060 Hb_001006_020--Hb_002183_060 Hb_000421_220 Hb_000421_220 Hb_001006_020--Hb_000421_220 Hb_000016_080 Hb_000016_080 Hb_001728_060--Hb_000016_080 Hb_001575_060 Hb_001575_060 Hb_001728_060--Hb_001575_060 Hb_001728_060--Hb_001006_020 Hb_001728_060--Hb_000107_150 Hb_011457_050 Hb_011457_050 Hb_001728_060--Hb_011457_050 Hb_000289_110--Hb_001366_180 Hb_002811_130 Hb_002811_130 Hb_000289_110--Hb_002811_130 Hb_000289_110--Hb_005144_050 Hb_002014_030 Hb_002014_030 Hb_000289_110--Hb_002014_030 Hb_000337_050 Hb_000337_050 Hb_000289_110--Hb_000337_050 Hb_003387_070 Hb_003387_070 Hb_027459_020--Hb_003387_070 Hb_002613_020 Hb_002613_020 Hb_027459_020--Hb_002613_020 Hb_027459_020--Hb_001728_060 Hb_000431_070 Hb_000431_070 Hb_027459_020--Hb_000431_070 Hb_017225_020 Hb_017225_020 Hb_027459_020--Hb_017225_020 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_001240_010 Hb_001240_010 Hb_000107_150--Hb_001240_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_018272_020 Hb_018272_020 Hb_003020_260--Hb_018272_020 Hb_003020_260--Hb_000289_110 Hb_003020_260--Hb_002014_030 Hb_003020_260--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_003020_260--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1447 8.86786 20.579 25.0236 16.1011 25.0287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.6095 49.1863 34.777 39.167 50.3287

CAGE analysis