Hb_000160_010

Information

Type -
Description -
Location Contig160: 9141-9659
Sequence    

Annotation

kegg
ID rcu:RCOM_0466790
description hypothetical protein
nr
ID XP_012078069.1
description PREDICTED: uncharacterized protein LOC105638816 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KA77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13063 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14302: 9609-9751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_010 0.0 - - PREDICTED: uncharacterized protein LOC105638816 [Jatropha curcas]
2 Hb_001276_030 0.0583473139 - - PREDICTED: uncharacterized protein LOC104881333 [Vitis vinifera]
3 Hb_001269_180 0.1045465449 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_001232_060 0.112338417 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001369_480 0.1319318855 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
6 Hb_004586_440 0.1369134203 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_000633_030 0.1377413241 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
8 Hb_001456_030 0.1390789071 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
9 Hb_000729_040 0.1498219832 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
10 Hb_005616_020 0.1500314273 - - kinase, putative [Ricinus communis]
11 Hb_003580_020 0.1508735815 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000462_120 0.1511421567 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
13 Hb_005116_150 0.152575825 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
14 Hb_055276_010 0.1530778374 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
15 Hb_050160_010 0.1544742035 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
16 Hb_006717_060 0.1549873466 - - PREDICTED: peroxidase 42 [Jatropha curcas]
17 Hb_003376_060 0.1568199771 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
18 Hb_000608_090 0.1568800574 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012055_070 0.1587169906 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_012114_090 0.1588694683 - - tubulin beta chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000160_010 Hb_000160_010 Hb_001276_030 Hb_001276_030 Hb_000160_010--Hb_001276_030 Hb_001269_180 Hb_001269_180 Hb_000160_010--Hb_001269_180 Hb_001232_060 Hb_001232_060 Hb_000160_010--Hb_001232_060 Hb_001369_480 Hb_001369_480 Hb_000160_010--Hb_001369_480 Hb_004586_440 Hb_004586_440 Hb_000160_010--Hb_004586_440 Hb_000633_030 Hb_000633_030 Hb_000160_010--Hb_000633_030 Hb_001276_030--Hb_000633_030 Hb_001276_030--Hb_001232_060 Hb_001276_030--Hb_001269_180 Hb_001456_030 Hb_001456_030 Hb_001276_030--Hb_001456_030 Hb_011082_030 Hb_011082_030 Hb_001276_030--Hb_011082_030 Hb_001269_180--Hb_001369_480 Hb_000336_120 Hb_000336_120 Hb_001269_180--Hb_000336_120 Hb_006717_060 Hb_006717_060 Hb_001269_180--Hb_006717_060 Hb_000531_030 Hb_000531_030 Hb_001269_180--Hb_000531_030 Hb_005116_150 Hb_005116_150 Hb_001269_180--Hb_005116_150 Hb_012114_090 Hb_012114_090 Hb_001269_180--Hb_012114_090 Hb_012055_070 Hb_012055_070 Hb_001232_060--Hb_012055_070 Hb_001232_060--Hb_001269_180 Hb_001232_060--Hb_004586_440 Hb_000815_220 Hb_000815_220 Hb_001232_060--Hb_000815_220 Hb_001369_480--Hb_012114_090 Hb_001369_480--Hb_000336_120 Hb_055276_010 Hb_055276_010 Hb_001369_480--Hb_055276_010 Hb_001369_480--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_001369_480--Hb_000699_220 Hb_000608_090 Hb_000608_090 Hb_004586_440--Hb_000608_090 Hb_004586_440--Hb_001369_480 Hb_000362_030 Hb_000362_030 Hb_004586_440--Hb_000362_030 Hb_071079_040 Hb_071079_040 Hb_004586_440--Hb_071079_040 Hb_031330_010 Hb_031330_010 Hb_004586_440--Hb_031330_010 Hb_011224_070 Hb_011224_070 Hb_004586_440--Hb_011224_070 Hb_000413_030 Hb_000413_030 Hb_000633_030--Hb_000413_030 Hb_001269_160 Hb_001269_160 Hb_000633_030--Hb_001269_160 Hb_005056_040 Hb_005056_040 Hb_000633_030--Hb_005056_040 Hb_000633_030--Hb_001456_030 Hb_031579_010 Hb_031579_010 Hb_000633_030--Hb_031579_010 Hb_064047_020 Hb_064047_020 Hb_000633_030--Hb_064047_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.23126 0.0462485 0.821752 7.12097 0 0.190573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123369 2.43153

CAGE analysis