Hb_000160_040

Information

Type -
Description -
Location Contig160: 28922-47268
Sequence    

Annotation

kegg
ID rcu:RCOM_0466760
description hypothetical protein
nr
ID XP_012089933.1
description PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
swissprot
ID Q9D853
description Protein-lysine N-methyltransferase Mettl10 OS=Mus musculus GN=Mettl10 PE=2 SV=1
trembl
ID A0A067JRR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02517 PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyltransferase-like protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14306: 28755-47266
cDNA
(Sanger)
(ID:Location)		 025_F01.ab1: 28755-32264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_040 0.0 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
2 Hb_106371_010 0.0490495758 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_009627_010 0.056604556 - - Protein dom-3, putative [Ricinus communis]
4 Hb_009620_040 0.0595037166 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
5 Hb_000768_110 0.0631533275 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
6 Hb_000173_510 0.0650282096 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
7 Hb_003090_080 0.0658211821 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
8 Hb_033834_060 0.0679867813 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
9 Hb_001172_010 0.0713814021 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
10 Hb_001790_020 0.0720389119 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
11 Hb_003362_040 0.0721127314 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
12 Hb_000538_100 0.0721584289 - - conserved hypothetical protein [Ricinus communis]
13 Hb_026099_010 0.0723955267 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
14 Hb_004450_010 0.0726940482 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
15 Hb_004204_020 0.0739818575 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
16 Hb_000207_390 0.0771780417 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
17 Hb_006827_020 0.0782276769 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002030_030 0.0792373399 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
19 Hb_002200_130 0.0794363113 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
20 Hb_002304_090 0.0800095285 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_040 Hb_000160_040 Hb_106371_010 Hb_106371_010 Hb_000160_040--Hb_106371_010 Hb_009627_010 Hb_009627_010 Hb_000160_040--Hb_009627_010 Hb_009620_040 Hb_009620_040 Hb_000160_040--Hb_009620_040 Hb_000768_110 Hb_000768_110 Hb_000160_040--Hb_000768_110 Hb_000173_510 Hb_000173_510 Hb_000160_040--Hb_000173_510 Hb_003090_080 Hb_003090_080 Hb_000160_040--Hb_003090_080 Hb_106371_010--Hb_003090_080 Hb_001790_020 Hb_001790_020 Hb_106371_010--Hb_001790_020 Hb_016898_010 Hb_016898_010 Hb_106371_010--Hb_016898_010 Hb_033834_060 Hb_033834_060 Hb_106371_010--Hb_033834_060 Hb_003952_150 Hb_003952_150 Hb_106371_010--Hb_003952_150 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_009627_010--Hb_033834_060 Hb_002097_090 Hb_002097_090 Hb_009620_040--Hb_002097_090 Hb_000236_370 Hb_000236_370 Hb_009620_040--Hb_000236_370 Hb_004934_090 Hb_004934_090 Hb_009620_040--Hb_004934_090 Hb_009620_040--Hb_000173_510 Hb_000645_150 Hb_000645_150 Hb_009620_040--Hb_000645_150 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_000768_110--Hb_000173_510 Hb_003428_070 Hb_003428_070 Hb_000173_510--Hb_003428_070 Hb_000173_510--Hb_000567_010 Hb_000283_070 Hb_000283_070 Hb_000173_510--Hb_000283_070 Hb_000059_150 Hb_000059_150 Hb_000173_510--Hb_000059_150 Hb_028639_010 Hb_028639_010 Hb_003090_080--Hb_028639_010 Hb_001369_420 Hb_001369_420 Hb_003090_080--Hb_001369_420 Hb_003090_080--Hb_033834_060 Hb_004117_130 Hb_004117_130 Hb_003090_080--Hb_004117_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.7811 35.5037 20.4479 26.6231 75.9825 82.2407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.1844 36.4925 42.8156 49.539 20.1606

CAGE analysis