Hb_000160_060

Information

Type -
Description -
Location Contig160: 59949-64121
Sequence    

Annotation

kegg
ID tcc:TCM_007505
description CAMP-regulated phosphoprotein 19-related protein isoform 1
nr
ID ABK94521.1
description unknown [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PDR8
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005886
description camp-regulated phosphoprotein 19-related protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_060 0.0 - - unknown [Populus trichocarpa]
2 Hb_005054_060 0.0848401608 - - PREDICTED: syntaxin-81 [Jatropha curcas]
3 Hb_009694_010 0.0916680854 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005731_050 0.0919426406 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
5 Hb_000111_380 0.0945374487 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
6 Hb_000562_030 0.0961562177 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000329_200 0.0961688208 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
8 Hb_000960_060 0.0967187294 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
9 Hb_004096_090 0.0967961697 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
10 Hb_002811_260 0.0970801615 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
11 Hb_028227_020 0.0973463625 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
12 Hb_000815_320 0.0975132208 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
13 Hb_004116_060 0.0984032986 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
14 Hb_001728_030 0.0984580267 - - 60S ribosomal protein L15 [Populus trichocarpa]
15 Hb_000836_470 0.1001079579 - - -
16 Hb_001157_020 0.1004275005 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
17 Hb_001579_270 0.1008618558 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
18 Hb_002686_110 0.1011080638 - - -
19 Hb_001195_480 0.1011409433 - - cop9 complex subunit, putative [Ricinus communis]
20 Hb_128048_010 0.101423381 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]

Gene co-expression network

sample Hb_000160_060 Hb_000160_060 Hb_005054_060 Hb_005054_060 Hb_000160_060--Hb_005054_060 Hb_009694_010 Hb_009694_010 Hb_000160_060--Hb_009694_010 Hb_005731_050 Hb_005731_050 Hb_000160_060--Hb_005731_050 Hb_000111_380 Hb_000111_380 Hb_000160_060--Hb_000111_380 Hb_000562_030 Hb_000562_030 Hb_000160_060--Hb_000562_030 Hb_000329_200 Hb_000329_200 Hb_000160_060--Hb_000329_200 Hb_000815_320 Hb_000815_320 Hb_005054_060--Hb_000815_320 Hb_004096_090 Hb_004096_090 Hb_005054_060--Hb_004096_090 Hb_003057_090 Hb_003057_090 Hb_005054_060--Hb_003057_090 Hb_005054_060--Hb_009694_010 Hb_001821_010 Hb_001821_010 Hb_005054_060--Hb_001821_010 Hb_000465_090 Hb_000465_090 Hb_005054_060--Hb_000465_090 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_009694_010--Hb_000465_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_000960_060 Hb_000960_060 Hb_005731_050--Hb_000960_060 Hb_004108_070 Hb_004108_070 Hb_005731_050--Hb_004108_070 Hb_005731_050--Hb_000111_380 Hb_002863_050 Hb_002863_050 Hb_005731_050--Hb_002863_050 Hb_033594_120 Hb_033594_120 Hb_005731_050--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_005731_050--Hb_003428_030 Hb_000111_380--Hb_004108_070 Hb_002601_110 Hb_002601_110 Hb_000111_380--Hb_002601_110 Hb_000656_170 Hb_000656_170 Hb_000111_380--Hb_000656_170 Hb_001140_370 Hb_001140_370 Hb_000111_380--Hb_001140_370 Hb_000111_380--Hb_033594_120 Hb_005773_060 Hb_005773_060 Hb_000562_030--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000562_030--Hb_002811_260 Hb_000359_150 Hb_000359_150 Hb_000562_030--Hb_000359_150 Hb_003544_020 Hb_003544_020 Hb_000562_030--Hb_003544_020 Hb_000690_190 Hb_000690_190 Hb_000562_030--Hb_000690_190 Hb_010361_010 Hb_010361_010 Hb_000329_200--Hb_010361_010 Hb_024650_070 Hb_024650_070 Hb_000329_200--Hb_024650_070 Hb_001662_150 Hb_001662_150 Hb_000329_200--Hb_001662_150 Hb_001604_060 Hb_001604_060 Hb_000329_200--Hb_001604_060 Hb_017225_020 Hb_017225_020 Hb_000329_200--Hb_017225_020 Hb_000656_240 Hb_000656_240 Hb_000329_200--Hb_000656_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.8109 12.5019 57.2492 52.0216 50.9342 70.3792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.4926 100.997 38.1214 37.301 31.6076

CAGE analysis