Hb_000160_070

Information

Type -
Description -
Location Contig160: 65591-69795
Sequence    

Annotation

kegg
ID tcc:TCM_019300
description RING/FYVE/PHD zinc finger superfamily protein
nr
ID XP_012089929.1
description PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02514 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_070 0.0 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
2 Hb_002740_080 0.073396332 - - flap endonuclease-1, putative [Ricinus communis]
3 Hb_001677_200 0.0754129191 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001227_120 0.0792602076 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
5 Hb_004064_040 0.081585972 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
6 Hb_005064_010 0.0818087935 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
7 Hb_000903_010 0.0842918736 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
8 Hb_000815_300 0.0919221975 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
9 Hb_011214_160 0.0925670979 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
10 Hb_001279_190 0.0928353095 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
11 Hb_003540_050 0.0937164697 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
12 Hb_000389_030 0.0942751668 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
13 Hb_000072_300 0.0970300791 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
14 Hb_023313_040 0.0977673186 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
15 Hb_007483_070 0.0984867037 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
16 Hb_000101_080 0.0985043769 - - PREDICTED: protein CREG1 [Jatropha curcas]
17 Hb_081599_010 0.1021207887 - - conserved hypothetical protein [Ricinus communis]
18 Hb_032202_220 0.1022732989 - - ring finger protein, putative [Ricinus communis]
19 Hb_002552_040 0.1025183656 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
20 Hb_001882_010 0.1035824048 - - -

Gene co-expression network

sample Hb_000160_070 Hb_000160_070 Hb_002740_080 Hb_002740_080 Hb_000160_070--Hb_002740_080 Hb_001677_200 Hb_001677_200 Hb_000160_070--Hb_001677_200 Hb_001227_120 Hb_001227_120 Hb_000160_070--Hb_001227_120 Hb_004064_040 Hb_004064_040 Hb_000160_070--Hb_004064_040 Hb_005064_010 Hb_005064_010 Hb_000160_070--Hb_005064_010 Hb_000903_010 Hb_000903_010 Hb_000160_070--Hb_000903_010 Hb_081599_010 Hb_081599_010 Hb_002740_080--Hb_081599_010 Hb_001279_190 Hb_001279_190 Hb_002740_080--Hb_001279_190 Hb_000072_300 Hb_000072_300 Hb_002740_080--Hb_000072_300 Hb_000815_300 Hb_000815_300 Hb_002740_080--Hb_000815_300 Hb_002740_080--Hb_001227_120 Hb_023313_040 Hb_023313_040 Hb_001677_200--Hb_023313_040 Hb_001405_210 Hb_001405_210 Hb_001677_200--Hb_001405_210 Hb_007597_010 Hb_007597_010 Hb_001677_200--Hb_007597_010 Hb_044486_020 Hb_044486_020 Hb_001677_200--Hb_044486_020 Hb_000702_090 Hb_000702_090 Hb_001677_200--Hb_000702_090 Hb_159809_070 Hb_159809_070 Hb_001227_120--Hb_159809_070 Hb_001227_120--Hb_001279_190 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_001227_120--Hb_023313_040 Hb_001227_120--Hb_000702_090 Hb_001227_120--Hb_081599_010 Hb_004064_040--Hb_005064_010 Hb_000836_300 Hb_000836_300 Hb_004064_040--Hb_000836_300 Hb_004064_040--Hb_000903_010 Hb_000056_160 Hb_000056_160 Hb_004064_040--Hb_000056_160 Hb_004064_040--Hb_001227_120 Hb_000154_050 Hb_000154_050 Hb_005064_010--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_005064_010--Hb_001002_060 Hb_005064_010--Hb_001227_120 Hb_003540_050 Hb_003540_050 Hb_005064_010--Hb_003540_050 Hb_002837_040 Hb_002837_040 Hb_000903_010--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000903_010--Hb_002871_140 Hb_000787_060 Hb_000787_060 Hb_000903_010--Hb_000787_060 Hb_002749_080 Hb_002749_080 Hb_000903_010--Hb_002749_080 Hb_000903_010--Hb_001002_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05591 1.62074 4.27852 5.22655 2.25385 2.12106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87193 1.95556 1.22541 2.26418 3.23454

CAGE analysis