Hb_000160_130

Information

Type -
Description -
Location Contig160: 127225-129693
Sequence    

Annotation

kegg
ID rcu:RCOM_0326850
description hypothetical protein
nr
ID XP_012089926.1
description PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02509 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14313: 128231-129659 , PASA_asmbl_14314: 127193-129654
cDNA
(Sanger)
(ID:Location)		 028_K16.ab1: 128564-129657 , 049_K20.ab1: 128826-129657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_130 0.0 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
2 Hb_007778_030 0.0798054289 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_010407_040 0.0926345852 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
4 Hb_003018_120 0.0953596443 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
5 Hb_145880_030 0.1019094341 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
6 Hb_023226_040 0.1024637843 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
7 Hb_000163_160 0.1046638917 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
8 Hb_000000_160 0.1089170688 - - PREDICTED: membrin-11 [Jatropha curcas]
9 Hb_004116_080 0.110688958 - - ATATH9, putative [Ricinus communis]
10 Hb_000805_120 0.1108872963 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
11 Hb_000023_230 0.1161129559 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
12 Hb_033594_110 0.1167023546 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
13 Hb_004297_070 0.1180445617 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
14 Hb_001279_310 0.118055758 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
15 Hb_001269_680 0.1181378606 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
16 Hb_077354_010 0.1186903511 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
17 Hb_165132_010 0.1191536983 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
18 Hb_000054_100 0.1196018614 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
19 Hb_000220_130 0.1197218241 - - Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
20 Hb_181288_010 0.1207070917 - - rac-GTP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000160_130 Hb_000160_130 Hb_007778_030 Hb_007778_030 Hb_000160_130--Hb_007778_030 Hb_010407_040 Hb_010407_040 Hb_000160_130--Hb_010407_040 Hb_003018_120 Hb_003018_120 Hb_000160_130--Hb_003018_120 Hb_145880_030 Hb_145880_030 Hb_000160_130--Hb_145880_030 Hb_023226_040 Hb_023226_040 Hb_000160_130--Hb_023226_040 Hb_000163_160 Hb_000163_160 Hb_000160_130--Hb_000163_160 Hb_001269_680 Hb_001269_680 Hb_007778_030--Hb_001269_680 Hb_007778_030--Hb_145880_030 Hb_007778_030--Hb_010407_040 Hb_165132_010 Hb_165132_010 Hb_007778_030--Hb_165132_010 Hb_007778_030--Hb_000163_160 Hb_000494_020 Hb_000494_020 Hb_010407_040--Hb_000494_020 Hb_010407_040--Hb_000163_160 Hb_010407_040--Hb_145880_030 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_002518_050 Hb_002518_050 Hb_003018_120--Hb_002518_050 Hb_011381_060 Hb_011381_060 Hb_003018_120--Hb_011381_060 Hb_000798_030 Hb_000798_030 Hb_003018_120--Hb_000798_030 Hb_001377_150 Hb_001377_150 Hb_003018_120--Hb_001377_150 Hb_000023_230 Hb_000023_230 Hb_003018_120--Hb_000023_230 Hb_004204_120 Hb_004204_120 Hb_003018_120--Hb_004204_120 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_001662_070 Hb_001662_070 Hb_145880_030--Hb_001662_070 Hb_145880_030--Hb_165132_010 Hb_145880_030--Hb_023226_040 Hb_002007_060 Hb_002007_060 Hb_023226_040--Hb_002007_060 Hb_000866_270 Hb_000866_270 Hb_023226_040--Hb_000866_270 Hb_023226_040--Hb_000023_230 Hb_004657_050 Hb_004657_050 Hb_023226_040--Hb_004657_050 Hb_023226_040--Hb_000000_160 Hb_028995_040 Hb_028995_040 Hb_023226_040--Hb_028995_040 Hb_001369_660 Hb_001369_660 Hb_000163_160--Hb_001369_660 Hb_000163_160--Hb_000494_020 Hb_004800_230 Hb_004800_230 Hb_000163_160--Hb_004800_230 Hb_002105_090 Hb_002105_090 Hb_000163_160--Hb_002105_090 Hb_000163_160--Hb_000000_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.692 16.3237 24.3048 17.7411 16.4014 36.2869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.7464 54.9568 22.512 8.25375 5.22572

CAGE analysis