Hb_000160_140

Information

Type -
Description -
Location Contig160: 131093-135148
Sequence    

Annotation

kegg
ID rcu:RCOM_0326960
description hypothetical protein
nr
ID XP_012089923.1
description PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
swissprot
ID B3NA01
description Ell-associated factor Eaf OS=Drosophila erecta GN=Eaf PE=3 SV=2
trembl
ID A0A067JFJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02508 PE=4 SV=1
Gene Ontology
ID GO:0032783
description ell-associated factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_140 0.0 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
2 Hb_004225_060 0.0499234432 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
3 Hb_000723_030 0.0601546178 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
4 Hb_002203_030 0.0677765085 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
5 Hb_000230_460 0.0795328723 - - Speckle-type POZ protein, putative [Ricinus communis]
6 Hb_010287_020 0.085134997 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
7 Hb_000137_010 0.0852651414 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
8 Hb_001439_220 0.0863959216 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
9 Hb_003687_120 0.0878505036 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
10 Hb_029622_120 0.0958738168 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
11 Hb_002110_160 0.0959879243 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
12 Hb_172979_010 0.0969209869 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
13 Hb_000506_110 0.0998131181 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
14 Hb_000680_120 0.1004597423 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
15 Hb_033642_120 0.1011240482 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
16 Hb_003470_040 0.1018659658 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
17 Hb_002435_100 0.1021891888 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
18 Hb_001500_120 0.1025252431 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000176_020 0.1033197991 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
20 Hb_004659_010 0.1034249238 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]

Gene co-expression network

sample Hb_000160_140 Hb_000160_140 Hb_004225_060 Hb_004225_060 Hb_000160_140--Hb_004225_060 Hb_000723_030 Hb_000723_030 Hb_000160_140--Hb_000723_030 Hb_002203_030 Hb_002203_030 Hb_000160_140--Hb_002203_030 Hb_000230_460 Hb_000230_460 Hb_000160_140--Hb_000230_460 Hb_010287_020 Hb_010287_020 Hb_000160_140--Hb_010287_020 Hb_000137_010 Hb_000137_010 Hb_000160_140--Hb_000137_010 Hb_004225_060--Hb_000723_030 Hb_001500_120 Hb_001500_120 Hb_004225_060--Hb_001500_120 Hb_004225_060--Hb_002203_030 Hb_003687_120 Hb_003687_120 Hb_004225_060--Hb_003687_120 Hb_029622_120 Hb_029622_120 Hb_004225_060--Hb_029622_120 Hb_000723_030--Hb_002203_030 Hb_000723_030--Hb_001500_120 Hb_000723_030--Hb_003687_120 Hb_000723_030--Hb_029622_120 Hb_000476_060 Hb_000476_060 Hb_002203_030--Hb_000476_060 Hb_000176_020 Hb_000176_020 Hb_002203_030--Hb_000176_020 Hb_002203_030--Hb_000230_460 Hb_178968_060 Hb_178968_060 Hb_000230_460--Hb_178968_060 Hb_002435_100 Hb_002435_100 Hb_000230_460--Hb_002435_100 Hb_000230_460--Hb_000176_020 Hb_000230_460--Hb_000137_010 Hb_007254_020 Hb_007254_020 Hb_000230_460--Hb_007254_020 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000956_040 Hb_000956_040 Hb_000137_010--Hb_000956_040 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51795 8.38648 10.1423 4.58413 2.08411 1.90442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0004 5.21579 2.49917 4.48238 6.08609

CAGE analysis