Hb_000160_150

Information

Type -
Description -
Location Contig160: 135738-137098
Sequence    

Annotation

kegg
ID cmo:103496858
description ATP-dependent Clp protease proteolytic subunit 3, chloroplastic
nr
ID XP_008457103.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
swissprot
ID Q9SXJ6
description ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1
trembl
ID B9T322
description ATP-dependent Clp protease proteolytic subunit OS=Ricinus communis GN=RCOM_0326970 PE=3 SV=1
Gene Ontology
ID GO:0009534
description atp-dependent clp protease proteolytic subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14317: 135209-150073 , PASA_asmbl_14318: 136432-136858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_150 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
2 Hb_002708_020 0.0948614184 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
3 Hb_171619_010 0.1396567803 - - protein binding protein, putative [Ricinus communis]
4 Hb_027402_090 0.1411668018 - - endonuclease, putative [Ricinus communis]
5 Hb_008246_030 0.1428840926 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
6 Hb_170532_010 0.155571329 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
7 Hb_002686_330 0.1586684686 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
8 Hb_012184_050 0.160154959 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
9 Hb_000365_160 0.1606627919 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
10 Hb_124961_010 0.16129991 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
11 Hb_001882_040 0.1673453632 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
12 Hb_000169_190 0.1683217101 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
13 Hb_001508_020 0.1687362336 - - myosin vIII, putative [Ricinus communis]
14 Hb_000165_140 0.1696147856 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
15 Hb_012404_070 0.1697085324 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
16 Hb_000045_320 0.1711452771 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
17 Hb_101020_010 0.1712593742 - - -
18 Hb_002783_020 0.1716416094 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
19 Hb_000140_490 0.172477243 - - BnaC01g32630D [Brassica napus]
20 Hb_149838_010 0.1768396872 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_150 Hb_000160_150 Hb_002708_020 Hb_002708_020 Hb_000160_150--Hb_002708_020 Hb_171619_010 Hb_171619_010 Hb_000160_150--Hb_171619_010 Hb_027402_090 Hb_027402_090 Hb_000160_150--Hb_027402_090 Hb_008246_030 Hb_008246_030 Hb_000160_150--Hb_008246_030 Hb_170532_010 Hb_170532_010 Hb_000160_150--Hb_170532_010 Hb_002686_330 Hb_002686_330 Hb_000160_150--Hb_002686_330 Hb_002708_020--Hb_002686_330 Hb_002708_020--Hb_008246_030 Hb_002708_020--Hb_027402_090 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_124961_010 Hb_124961_010 Hb_171619_010--Hb_124961_010 Hb_171619_010--Hb_170532_010 Hb_003297_020 Hb_003297_020 Hb_171619_010--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_171619_010--Hb_101020_010 Hb_006230_040 Hb_006230_040 Hb_171619_010--Hb_006230_040 Hb_000265_220 Hb_000265_220 Hb_027402_090--Hb_000265_220 Hb_149838_010 Hb_149838_010 Hb_027402_090--Hb_149838_010 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_000169_190 Hb_000169_190 Hb_027402_090--Hb_000169_190 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_004920_060 Hb_004920_060 Hb_008246_030--Hb_004920_060 Hb_002612_010 Hb_002612_010 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_017895_020 Hb_017895_020 Hb_008246_030--Hb_017895_020 Hb_170532_010--Hb_124961_010 Hb_004570_050 Hb_004570_050 Hb_170532_010--Hb_004570_050 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_002686_330--Hb_027402_090 Hb_000024_070 Hb_000024_070 Hb_002686_330--Hb_000024_070 Hb_002686_330--Hb_008246_030 Hb_000170_060 Hb_000170_060 Hb_002686_330--Hb_000170_060 Hb_002686_330--Hb_149838_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
194.742 107.462 226.7 63.9039 176.436 301.493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2567 21.2069 10.5806 26.0693 43.9152

CAGE analysis