Hb_000160_210

Information

Type -
Description -
Location Contig160: 174131-175779
Sequence    

Annotation

kegg
ID rcu:RCOM_0140630
description hypothetical protein
nr
ID XP_002534270.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T7Q1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0140630 PE=4 SV=1
Gene Ontology
ID GO:0016740
description glutamyl-trna amidotransferase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14326: 176769-181510 , PASA_asmbl_14327: 176731-185211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007007_060 0.0587121109 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
3 Hb_003794_010 0.0625298397 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
4 Hb_004100_080 0.0666188568 - - conserved hypothetical protein [Ricinus communis]
5 Hb_023386_020 0.0674829143 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
6 Hb_000009_090 0.068767252 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
7 Hb_079526_030 0.0704888182 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
8 Hb_000926_190 0.0723615911 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_030736_100 0.0738356138 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004155_010 0.0752074744 - - PREDICTED: la protein 1 [Jatropha curcas]
11 Hb_001227_030 0.0762159651 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
12 Hb_002684_040 0.0766524321 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
13 Hb_000920_060 0.0774027205 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
14 Hb_008695_110 0.0815978605 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
15 Hb_000205_190 0.0820294572 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_005993_050 0.0824302047 - - Protein AFR, putative [Ricinus communis]
17 Hb_000029_050 0.0830784159 - - expressed protein, putative [Ricinus communis]
18 Hb_005779_080 0.0839793605 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
19 Hb_007307_020 0.0841616517 - - DNA binding protein, putative [Ricinus communis]
20 Hb_000331_110 0.084359567 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000160_210 Hb_000160_210 Hb_007007_060 Hb_007007_060 Hb_000160_210--Hb_007007_060 Hb_003794_010 Hb_003794_010 Hb_000160_210--Hb_003794_010 Hb_004100_080 Hb_004100_080 Hb_000160_210--Hb_004100_080 Hb_023386_020 Hb_023386_020 Hb_000160_210--Hb_023386_020 Hb_000009_090 Hb_000009_090 Hb_000160_210--Hb_000009_090 Hb_079526_030 Hb_079526_030 Hb_000160_210--Hb_079526_030 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_003794_010--Hb_000009_090 Hb_003794_010--Hb_007007_060 Hb_001390_110 Hb_001390_110 Hb_003794_010--Hb_001390_110 Hb_007904_120 Hb_007904_120 Hb_003794_010--Hb_007904_120 Hb_002909_050 Hb_002909_050 Hb_003794_010--Hb_002909_050 Hb_004100_080--Hb_023386_020 Hb_000856_110 Hb_000856_110 Hb_004100_080--Hb_000856_110 Hb_004841_010 Hb_004841_010 Hb_004100_080--Hb_004841_010 Hb_007657_010 Hb_007657_010 Hb_004100_080--Hb_007657_010 Hb_004412_010 Hb_004412_010 Hb_004100_080--Hb_004412_010 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_005993_050 Hb_005993_050 Hb_000009_090--Hb_005993_050 Hb_000009_090--Hb_007007_060 Hb_000853_230 Hb_000853_230 Hb_000009_090--Hb_000853_230 Hb_005054_230 Hb_005054_230 Hb_000009_090--Hb_005054_230 Hb_001089_110 Hb_001089_110 Hb_079526_030--Hb_001089_110 Hb_000331_110 Hb_000331_110 Hb_079526_030--Hb_000331_110 Hb_001433_070 Hb_001433_070 Hb_079526_030--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_079526_030--Hb_003878_110 Hb_001821_160 Hb_001821_160 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1078 6.48671 6.73927 2.98637 8.39531 8.6625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73721 6.1898 5.6028 5.98568 7.48268

CAGE analysis