Hb_000160_220

Information

Type -
Description -
Location Contig160: 176640-185346
Sequence    

Annotation

kegg
ID rcu:RCOM_0140520
description Protein C20orf4, putative
nr
ID XP_012089913.1
description PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q09305
description Protein AAR2 homolog OS=Caenorhabditis elegans GN=F10B5.2 PE=1 SV=1
trembl
ID A0A067JRP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02497 PE=4 SV=1
Gene Ontology
ID GO:0000278
description protein aar2 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14326: 176769-181510 , PASA_asmbl_14327: 176731-185211 , PASA_asmbl_14328: 180683-180947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_220 0.0 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
2 Hb_058702_010 0.0659059992 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
3 Hb_000567_050 0.0769563544 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
4 Hb_010180_040 0.080800471 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
5 Hb_010931_040 0.0822802021 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
6 Hb_187739_020 0.0856651014 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_003428_070 0.0861576168 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
8 Hb_002960_160 0.0875379277 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
9 Hb_000347_130 0.0877932285 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
10 Hb_019813_010 0.088368956 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
11 Hb_005494_020 0.0893855897 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
12 Hb_056196_050 0.090043968 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
13 Hb_008714_020 0.0907424246 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
14 Hb_000600_070 0.0920280067 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
15 Hb_002903_080 0.0926663145 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
16 Hb_002027_270 0.0948185433 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
17 Hb_004450_010 0.0949305957 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
18 Hb_015763_030 0.0952012282 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012023_020 0.0965267271 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
20 Hb_031862_180 0.0967056772 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_220 Hb_000160_220 Hb_058702_010 Hb_058702_010 Hb_000160_220--Hb_058702_010 Hb_000567_050 Hb_000567_050 Hb_000160_220--Hb_000567_050 Hb_010180_040 Hb_010180_040 Hb_000160_220--Hb_010180_040 Hb_010931_040 Hb_010931_040 Hb_000160_220--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_000160_220--Hb_187739_020 Hb_003428_070 Hb_003428_070 Hb_000160_220--Hb_003428_070 Hb_102269_010 Hb_102269_010 Hb_058702_010--Hb_102269_010 Hb_005494_020 Hb_005494_020 Hb_058702_010--Hb_005494_020 Hb_002960_160 Hb_002960_160 Hb_058702_010--Hb_002960_160 Hb_002903_080 Hb_002903_080 Hb_058702_010--Hb_002903_080 Hb_002301_260 Hb_002301_260 Hb_058702_010--Hb_002301_260 Hb_000567_050--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000567_050--Hb_000023_190 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_002044_060 Hb_002044_060 Hb_000567_050--Hb_002044_060 Hb_010381_060 Hb_010381_060 Hb_000567_050--Hb_010381_060 Hb_008714_020 Hb_008714_020 Hb_010180_040--Hb_008714_020 Hb_010180_040--Hb_005494_020 Hb_015763_030 Hb_015763_030 Hb_010180_040--Hb_015763_030 Hb_000347_130 Hb_000347_130 Hb_010180_040--Hb_000347_130 Hb_000046_450 Hb_000046_450 Hb_010180_040--Hb_000046_450 Hb_003464_020 Hb_003464_020 Hb_010931_040--Hb_003464_020 Hb_002235_160 Hb_002235_160 Hb_010931_040--Hb_002235_160 Hb_010931_040--Hb_002044_060 Hb_001085_320 Hb_001085_320 Hb_010931_040--Hb_001085_320 Hb_010931_040--Hb_000023_190 Hb_010931_040--Hb_000567_050 Hb_000866_030 Hb_000866_030 Hb_187739_020--Hb_000866_030 Hb_002982_040 Hb_002982_040 Hb_187739_020--Hb_002982_040 Hb_003656_140 Hb_003656_140 Hb_187739_020--Hb_003656_140 Hb_031862_180 Hb_031862_180 Hb_187739_020--Hb_031862_180 Hb_187739_020--Hb_008714_020 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6158 11.0875 5.85711 8.69426 15.0036 29.8251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1667 5.82454 5.65709 7.58799 6.50315

CAGE analysis