Hb_000160_250

Information

Type -
Description -
Location Contig160: 223608-224051
Sequence    

Annotation

kegg
ID tcc:TCM_019235
description hypothetical protein
nr
ID XP_007033071.1
description Uncharacterized protein TCM_019235 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EHV2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_019235 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_250 0.0 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
2 Hb_001268_150 0.0831716841 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_000290_030 0.0844504275 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
4 Hb_002942_200 0.0929026861 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
5 Hb_008221_200 0.0929087174 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
6 Hb_004696_010 0.0973814561 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
7 Hb_000718_060 0.1031536234 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
8 Hb_003054_070 0.1090578291 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
9 Hb_009393_090 0.1111988776 - - acyltransferase, putative [Ricinus communis]
10 Hb_000856_200 0.1130296988 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
11 Hb_000617_330 0.1139151113 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
12 Hb_010222_040 0.1147915433 - - PREDICTED: kinesin-2 [Jatropha curcas]
13 Hb_010557_020 0.1167011795 - - Mlo protein [Hevea brasiliensis]
14 Hb_001206_100 0.1197766891 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
15 Hb_005542_120 0.1206942251 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
16 Hb_028008_040 0.1207613551 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010164_030 0.1214076125 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
18 Hb_003125_210 0.1218882793 - - Phospholipase C 4 precursor, putative [Ricinus communis]
19 Hb_000977_020 0.1220377909 - - beta-hexosaminidase, putative [Ricinus communis]
20 Hb_001296_060 0.1233108646 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000160_250 Hb_000160_250 Hb_001268_150 Hb_001268_150 Hb_000160_250--Hb_001268_150 Hb_000290_030 Hb_000290_030 Hb_000160_250--Hb_000290_030 Hb_002942_200 Hb_002942_200 Hb_000160_250--Hb_002942_200 Hb_008221_200 Hb_008221_200 Hb_000160_250--Hb_008221_200 Hb_004696_010 Hb_004696_010 Hb_000160_250--Hb_004696_010 Hb_000718_060 Hb_000718_060 Hb_000160_250--Hb_000718_060 Hb_001206_100 Hb_001206_100 Hb_001268_150--Hb_001206_100 Hb_001268_150--Hb_002942_200 Hb_000364_090 Hb_000364_090 Hb_001268_150--Hb_000364_090 Hb_002284_060 Hb_002284_060 Hb_001268_150--Hb_002284_060 Hb_001268_150--Hb_000290_030 Hb_010557_020 Hb_010557_020 Hb_000290_030--Hb_010557_020 Hb_000977_030 Hb_000977_030 Hb_000290_030--Hb_000977_030 Hb_000856_200 Hb_000856_200 Hb_000290_030--Hb_000856_200 Hb_002724_010 Hb_002724_010 Hb_000290_030--Hb_002724_010 Hb_000473_100 Hb_000473_100 Hb_000290_030--Hb_000473_100 Hb_001098_040 Hb_001098_040 Hb_002942_200--Hb_001098_040 Hb_002942_200--Hb_008221_200 Hb_002942_200--Hb_001206_100 Hb_009421_070 Hb_009421_070 Hb_002942_200--Hb_009421_070 Hb_007270_020 Hb_007270_020 Hb_002942_200--Hb_007270_020 Hb_009393_090 Hb_009393_090 Hb_002942_200--Hb_009393_090 Hb_008221_200--Hb_000718_060 Hb_008054_030 Hb_008054_030 Hb_008221_200--Hb_008054_030 Hb_008221_200--Hb_009393_090 Hb_001117_050 Hb_001117_050 Hb_008221_200--Hb_001117_050 Hb_003339_010 Hb_003339_010 Hb_008221_200--Hb_003339_010 Hb_011918_070 Hb_011918_070 Hb_004696_010--Hb_011918_070 Hb_003580_050 Hb_003580_050 Hb_004696_010--Hb_003580_050 Hb_028008_040 Hb_028008_040 Hb_004696_010--Hb_028008_040 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_000718_060--Hb_009393_090 Hb_001100_070 Hb_001100_070 Hb_000718_060--Hb_001100_070 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_000718_060--Hb_007270_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.97604 14.9372 26.9367 0 0.160143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.493106 0.258213 0 3.15472 19.6825

CAGE analysis