Hb_000160_290

Information

Type -
Description -
Location Contig160: 243053-263853
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_93123
description hypothetical protein
nr
ID CBI33543.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q8RY22
description Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1
trembl
ID A0A0B0NXF9
description Protease Do-like 7 OS=Gossypium arboreum GN=F383_09479 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protease do-like 7 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14336: 243080-263753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_290 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002174_020 0.0541533566 - - ring finger protein, putative [Ricinus communis]
3 Hb_000922_370 0.0567103984 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
4 Hb_001417_050 0.0570213058 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
5 Hb_002235_160 0.0603676783 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
6 Hb_003044_020 0.0616591425 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
7 Hb_001493_040 0.0621324311 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
8 Hb_000109_100 0.0621707311 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
9 Hb_003124_130 0.0625433605 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
10 Hb_001454_320 0.0632544761 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
11 Hb_006252_020 0.0636718851 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
12 Hb_000743_040 0.0645267452 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
13 Hb_005731_090 0.0657252827 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
14 Hb_000796_190 0.0664252609 - - hypothetical protein F383_31148 [Gossypium arboreum]
15 Hb_000209_070 0.0691121589 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
16 Hb_002329_040 0.0696848128 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
17 Hb_000935_090 0.0705136882 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
18 Hb_056196_050 0.070549961 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
19 Hb_002042_140 0.0709181713 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
20 Hb_001473_090 0.0726001635 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_290 Hb_000160_290 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_008112_030 Hb_008112_030 Hb_002174_020--Hb_008112_030 Hb_001454_280 Hb_001454_280 Hb_002174_020--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_002174_020--Hb_006252_020 Hb_005731_090 Hb_005731_090 Hb_002174_020--Hb_005731_090 Hb_007635_030 Hb_007635_030 Hb_002174_020--Hb_007635_030 Hb_000922_370--Hb_003044_020 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_002329_040 Hb_002329_040 Hb_000922_370--Hb_002329_040 Hb_003362_070 Hb_003362_070 Hb_000922_370--Hb_003362_070 Hb_000922_370--Hb_002174_020 Hb_001417_050--Hb_001493_040 Hb_010315_090 Hb_010315_090 Hb_001417_050--Hb_010315_090 Hb_002422_050 Hb_002422_050 Hb_001417_050--Hb_002422_050 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190 Hb_002235_160--Hb_000796_190 Hb_117552_010 Hb_117552_010 Hb_002235_160--Hb_117552_010 Hb_001235_200 Hb_001235_200 Hb_002235_160--Hb_001235_200 Hb_003124_130 Hb_003124_130 Hb_002235_160--Hb_003124_130 Hb_147737_010 Hb_147737_010 Hb_002235_160--Hb_147737_010 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_003044_020--Hb_006252_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003044_020--Hb_003362_070 Hb_003044_020--Hb_002329_040 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_034243_020 Hb_034243_020 Hb_001493_040--Hb_034243_020 Hb_001493_040--Hb_010315_090 Hb_001493_040--Hb_002422_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9057 30.6534 13.8672 20.0423 36.8575 44.0358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6164 9.43859 15.0683 23.2029 18.4939

CAGE analysis