Hb_000160_320

Information

Type -
Description -
Location Contig160: 285918-304060
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08730g
description hypothetical protein
nr
ID XP_006384160.1
description hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
swissprot
ID P49173
description Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1
trembl
ID U5GKN6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08730g PE=4 SV=1
Gene Ontology
ID GO:0005829
description protease do-like 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14341: 291838-292141 , PASA_asmbl_14343: 299268-299504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_320 0.0 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
2 Hb_000283_080 0.1403453181 - - -
3 Hb_007747_210 0.1444072291 - - unnamed protein product [Vitis vinifera]
4 Hb_003734_110 0.1487916555 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
5 Hb_000883_060 0.1493277415 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
6 Hb_011386_020 0.1509466636 - - unnamed protein product [Vitis vinifera]
7 Hb_001898_160 0.1522725792 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
8 Hb_000865_060 0.1557359722 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
9 Hb_002304_070 0.159427451 - - -
10 Hb_001817_020 0.1607589767 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
11 Hb_015198_020 0.1636237348 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003467_030 0.1665938959 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_001341_070 0.1673922738 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
14 Hb_001511_070 0.1688452488 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
15 Hb_001439_060 0.169401924 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
16 Hb_003020_220 0.1700874235 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
17 Hb_042202_030 0.1701087819 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
18 Hb_003291_010 0.1703129868 - - ATP-dependent protease La, putative [Ricinus communis]
19 Hb_034013_020 0.1705369631 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
20 Hb_000143_030 0.1730779463 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_320 Hb_000160_320 Hb_000283_080 Hb_000283_080 Hb_000160_320--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000160_320--Hb_007747_210 Hb_003734_110 Hb_003734_110 Hb_000160_320--Hb_003734_110 Hb_000883_060 Hb_000883_060 Hb_000160_320--Hb_000883_060 Hb_011386_020 Hb_011386_020 Hb_000160_320--Hb_011386_020 Hb_001898_160 Hb_001898_160 Hb_000160_320--Hb_001898_160 Hb_001511_070 Hb_001511_070 Hb_000283_080--Hb_001511_070 Hb_129910_010 Hb_129910_010 Hb_000283_080--Hb_129910_010 Hb_002307_170 Hb_002307_170 Hb_000283_080--Hb_002307_170 Hb_001898_070 Hb_001898_070 Hb_000283_080--Hb_001898_070 Hb_000122_210 Hb_000122_210 Hb_000283_080--Hb_000122_210 Hb_000020_120 Hb_000020_120 Hb_000283_080--Hb_000020_120 Hb_042202_030 Hb_042202_030 Hb_007747_210--Hb_042202_030 Hb_079312_010 Hb_079312_010 Hb_007747_210--Hb_079312_010 Hb_005237_050 Hb_005237_050 Hb_007747_210--Hb_005237_050 Hb_009455_020 Hb_009455_020 Hb_007747_210--Hb_009455_020 Hb_000215_070 Hb_000215_070 Hb_007747_210--Hb_000215_070 Hb_003020_220 Hb_003020_220 Hb_007747_210--Hb_003020_220 Hb_003734_110--Hb_007747_210 Hb_001439_060 Hb_001439_060 Hb_003734_110--Hb_001439_060 Hb_003734_110--Hb_011386_020 Hb_000052_020 Hb_000052_020 Hb_003734_110--Hb_000052_020 Hb_000289_110 Hb_000289_110 Hb_003734_110--Hb_000289_110 Hb_001951_180 Hb_001951_180 Hb_003734_110--Hb_001951_180 Hb_000010_340 Hb_000010_340 Hb_000883_060--Hb_000010_340 Hb_001341_070 Hb_001341_070 Hb_000883_060--Hb_001341_070 Hb_001671_010 Hb_001671_010 Hb_000883_060--Hb_001671_010 Hb_015941_020 Hb_015941_020 Hb_000883_060--Hb_015941_020 Hb_006711_100 Hb_006711_100 Hb_000883_060--Hb_006711_100 Hb_000913_020 Hb_000913_020 Hb_000883_060--Hb_000913_020 Hb_003544_010 Hb_003544_010 Hb_011386_020--Hb_003544_010 Hb_003467_030 Hb_003467_030 Hb_011386_020--Hb_003467_030 Hb_003994_110 Hb_003994_110 Hb_011386_020--Hb_003994_110 Hb_006274_050 Hb_006274_050 Hb_011386_020--Hb_006274_050 Hb_000337_050 Hb_000337_050 Hb_011386_020--Hb_000337_050 Hb_000019_200 Hb_000019_200 Hb_011386_020--Hb_000019_200 Hb_000047_030 Hb_000047_030 Hb_001898_160--Hb_000047_030 Hb_082609_010 Hb_082609_010 Hb_001898_160--Hb_082609_010 Hb_000236_070 Hb_000236_070 Hb_001898_160--Hb_000236_070 Hb_000143_030 Hb_000143_030 Hb_001898_160--Hb_000143_030 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100 Hb_015198_020 Hb_015198_020 Hb_001898_160--Hb_015198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.550737 0.298806 0.339404 0.14739 0.415808 0.778944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1042 0.573039 1.82098 0.676825 1.71703

CAGE analysis