Hb_000160_330

Information

Type -
Description -
Location Contig160: 312136-315000
Sequence    

Annotation

kegg
ID tcc:TCM_019211
description ARM repeat superfamily protein
nr
ID XP_012089902.1
description PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067JRN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02487 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14345: 313899-314327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_330 0.0 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
2 Hb_002400_060 0.1266897669 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
3 Hb_003746_010 0.1364249396 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009674_050 0.1442659155 - - Endosomal P24A protein precursor, putative [Ricinus communis]
5 Hb_007735_060 0.1478718552 - - PPase [Hevea brasiliensis]
6 Hb_009178_060 0.1478958262 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_002817_060 0.1485465929 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
8 Hb_001801_020 0.1497273936 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
9 Hb_006846_080 0.1512274686 - - calnexin, putative [Ricinus communis]
10 Hb_034585_010 0.1514532507 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
11 Hb_005511_150 0.1522676197 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
12 Hb_001210_040 0.1528768008 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
13 Hb_001029_040 0.1535803421 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
14 Hb_007897_030 0.1543208035 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
15 Hb_012053_090 0.1544224883 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
16 Hb_005914_040 0.1552339173 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
17 Hb_004917_010 0.1559586666 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
18 Hb_010180_060 0.1567585807 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
19 Hb_000484_010 0.1589408895 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
20 Hb_000941_150 0.1599505674 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_330 Hb_000160_330 Hb_002400_060 Hb_002400_060 Hb_000160_330--Hb_002400_060 Hb_003746_010 Hb_003746_010 Hb_000160_330--Hb_003746_010 Hb_009674_050 Hb_009674_050 Hb_000160_330--Hb_009674_050 Hb_007735_060 Hb_007735_060 Hb_000160_330--Hb_007735_060 Hb_009178_060 Hb_009178_060 Hb_000160_330--Hb_009178_060 Hb_002817_060 Hb_002817_060 Hb_000160_330--Hb_002817_060 Hb_001801_020 Hb_001801_020 Hb_002400_060--Hb_001801_020 Hb_002311_130 Hb_002311_130 Hb_002400_060--Hb_002311_130 Hb_001210_040 Hb_001210_040 Hb_002400_060--Hb_001210_040 Hb_002400_060--Hb_009674_050 Hb_033642_060 Hb_033642_060 Hb_002400_060--Hb_033642_060 Hb_000265_140 Hb_000265_140 Hb_002400_060--Hb_000265_140 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_003746_010--Hb_009674_050 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_005348_110 Hb_005348_110 Hb_009674_050--Hb_005348_110 Hb_009252_010 Hb_009252_010 Hb_009674_050--Hb_009252_010 Hb_030959_010 Hb_030959_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140 Hb_007735_060--Hb_001801_020 Hb_007735_060--Hb_002817_060 Hb_000367_020 Hb_000367_020 Hb_007735_060--Hb_000367_020 Hb_000484_010 Hb_000484_010 Hb_007735_060--Hb_000484_010 Hb_012053_090 Hb_012053_090 Hb_007735_060--Hb_012053_090 Hb_002235_200 Hb_002235_200 Hb_007735_060--Hb_002235_200 Hb_005511_150 Hb_005511_150 Hb_009178_060--Hb_005511_150 Hb_002232_390 Hb_002232_390 Hb_009178_060--Hb_002232_390 Hb_000803_320 Hb_000803_320 Hb_009178_060--Hb_000803_320 Hb_005914_040 Hb_005914_040 Hb_009178_060--Hb_005914_040 Hb_011364_020 Hb_011364_020 Hb_009178_060--Hb_011364_020 Hb_005250_010 Hb_005250_010 Hb_009178_060--Hb_005250_010 Hb_000347_300 Hb_000347_300 Hb_002817_060--Hb_000347_300 Hb_001828_170 Hb_001828_170 Hb_002817_060--Hb_001828_170 Hb_001511_180 Hb_001511_180 Hb_002817_060--Hb_001511_180 Hb_001329_250 Hb_001329_250 Hb_002817_060--Hb_001329_250 Hb_006839_010 Hb_006839_010 Hb_002817_060--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002817_060--Hb_000123_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35821 6.23735 2.57288 9.2231 4.5564 3.11199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43748 1.15981 5.74001 2.95766 12.4145

CAGE analysis