Hb_000161_020

Information

Type -
Description -
Location Contig161: 28817-29257
Sequence    

Annotation

kegg
ID cic:CICLE_v10003356mg
description hypothetical protein
nr
ID XP_006431822.1
description hypothetical protein CICLE_v10003356mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID W5H8Z3
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0051536
description ferredoxin- chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_020 0.0 - - hypothetical protein CICLE_v10003356mg, partial [Citrus clementina]
2 Hb_002289_130 0.2145759919 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
3 Hb_001135_280 0.2932811243 - - -
4 Hb_003688_170 0.3142269495 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
5 Hb_011063_020 0.3178317784 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
6 Hb_000590_040 0.31792535 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
7 Hb_006029_020 0.3194748503 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
8 Hb_012181_010 0.3346396263 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_024404_010 0.3412448545 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
10 Hb_000590_030 0.3536115598 - - conserved hypothetical protein [Ricinus communis]
11 Hb_104812_030 0.3544816013 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
12 Hb_011174_050 0.362409708 - - -
13 Hb_000331_150 0.3640062814 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_001545_210 0.3651714687 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
15 Hb_003069_020 0.367321433 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000160_030 0.3709279886 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
17 Hb_003540_130 0.3731414331 - - -
18 Hb_000101_150 0.3776374358 - - -
19 Hb_001416_050 0.3777921786 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
20 Hb_001242_090 0.3782733231 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]

Gene co-expression network

sample Hb_000161_020 Hb_000161_020 Hb_002289_130 Hb_002289_130 Hb_000161_020--Hb_002289_130 Hb_001135_280 Hb_001135_280 Hb_000161_020--Hb_001135_280 Hb_003688_170 Hb_003688_170 Hb_000161_020--Hb_003688_170 Hb_011063_020 Hb_011063_020 Hb_000161_020--Hb_011063_020 Hb_000590_040 Hb_000590_040 Hb_000161_020--Hb_000590_040 Hb_006029_020 Hb_006029_020 Hb_000161_020--Hb_006029_020 Hb_001545_210 Hb_001545_210 Hb_002289_130--Hb_001545_210 Hb_001242_090 Hb_001242_090 Hb_002289_130--Hb_001242_090 Hb_177179_010 Hb_177179_010 Hb_002289_130--Hb_177179_010 Hb_002289_130--Hb_001135_280 Hb_002289_130--Hb_003688_170 Hb_000513_070 Hb_000513_070 Hb_001135_280--Hb_000513_070 Hb_010436_030 Hb_010436_030 Hb_001135_280--Hb_010436_030 Hb_001135_280--Hb_001242_090 Hb_000883_030 Hb_000883_030 Hb_001135_280--Hb_000883_030 Hb_006111_070 Hb_006111_070 Hb_001135_280--Hb_006111_070 Hb_006452_090 Hb_006452_090 Hb_001135_280--Hb_006452_090 Hb_003688_170--Hb_011063_020 Hb_003688_160 Hb_003688_160 Hb_003688_170--Hb_003688_160 Hb_000251_090 Hb_000251_090 Hb_003688_170--Hb_000251_090 Hb_003688_170--Hb_001242_090 Hb_000160_030 Hb_000160_030 Hb_003688_170--Hb_000160_030 Hb_024404_010 Hb_024404_010 Hb_003688_170--Hb_024404_010 Hb_011063_020--Hb_000160_030 Hb_000590_030 Hb_000590_030 Hb_011063_020--Hb_000590_030 Hb_011063_020--Hb_024404_010 Hb_011063_020--Hb_000251_090 Hb_002139_010 Hb_002139_010 Hb_011063_020--Hb_002139_010 Hb_003540_130 Hb_003540_130 Hb_000590_040--Hb_003540_130 Hb_000331_150 Hb_000331_150 Hb_000590_040--Hb_000331_150 Hb_003069_020 Hb_003069_020 Hb_000590_040--Hb_003069_020 Hb_004324_350 Hb_004324_350 Hb_000590_040--Hb_004324_350 Hb_002028_100 Hb_002028_100 Hb_000590_040--Hb_002028_100 Hb_067188_010 Hb_067188_010 Hb_000590_040--Hb_067188_010 Hb_023610_010 Hb_023610_010 Hb_006029_020--Hb_023610_010 Hb_000300_530 Hb_000300_530 Hb_006029_020--Hb_000300_530 Hb_098315_110 Hb_098315_110 Hb_006029_020--Hb_098315_110 Hb_000176_170 Hb_000176_170 Hb_006029_020--Hb_000176_170 Hb_003768_040 Hb_003768_040 Hb_006029_020--Hb_003768_040 Hb_003125_050 Hb_003125_050 Hb_006029_020--Hb_003125_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23965 0 0 0 3.5977 0.413919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.63536 0.347069 1.65756

CAGE analysis