Hb_000161_030

Information

Type transcription factor
Description TF Family: TCP
Location Contig161: 59722-61368
Sequence    

Annotation

kegg
ID tcc:TCM_006249
description TCP family transcription factor
nr
ID XP_012066639.1
description PREDICTED: transcription factor TCP8 [Jatropha curcas]
swissprot
ID Q9C518
description Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=1 SV=1
trembl
ID A0A067LE96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00211 PE=4 SV=1
Gene Ontology
ID GO:0001047
description transcription factor tcp8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14414: 59795-61808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_030 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
2 Hb_006029_010 0.060594273 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
3 Hb_002818_040 0.0805271081 - - tRNA synthetase-related family protein [Populus trichocarpa]
4 Hb_000078_130 0.0846689538 - - -
5 Hb_000491_080 0.0876164204 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
6 Hb_000413_130 0.0889919481 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
7 Hb_002377_050 0.091322788 - - Agmatine deiminase, putative [Ricinus communis]
8 Hb_000001_180 0.0931222477 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
9 Hb_006091_030 0.0944256961 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
10 Hb_000208_290 0.0962183165 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
11 Hb_003384_030 0.0962505431 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
12 Hb_182026_010 0.096386481 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
13 Hb_006478_110 0.0964864149 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
14 Hb_002422_060 0.0967153469 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
15 Hb_002149_040 0.0976443675 - - conserved hypothetical protein [Ricinus communis]
16 Hb_029281_010 0.0983100807 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
17 Hb_000340_510 0.1004284844 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
18 Hb_011496_010 0.100808197 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
19 Hb_001040_170 0.1008197236 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_007441_070 0.1009153545 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]

Gene co-expression network

sample Hb_000161_030 Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_000161_030--Hb_006029_010 Hb_002818_040 Hb_002818_040 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000491_080 Hb_000491_080 Hb_000161_030--Hb_000491_080 Hb_000413_130 Hb_000413_130 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_003581_140 Hb_003581_140 Hb_000078_130--Hb_003581_140 Hb_001454_060 Hb_001454_060 Hb_000078_130--Hb_001454_060 Hb_002014_080 Hb_002014_080 Hb_000078_130--Hb_002014_080 Hb_000490_030 Hb_000490_030 Hb_000078_130--Hb_000490_030 Hb_000230_330 Hb_000230_330 Hb_000078_130--Hb_000230_330 Hb_006091_030 Hb_006091_030 Hb_000078_130--Hb_006091_030 Hb_160818_010 Hb_160818_010 Hb_000491_080--Hb_160818_010 Hb_011316_030 Hb_011316_030 Hb_000491_080--Hb_011316_030 Hb_001776_080 Hb_001776_080 Hb_000491_080--Hb_001776_080 Hb_000491_080--Hb_002377_050 Hb_000491_080--Hb_002818_040 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_000413_130--Hb_005314_010 Hb_000367_290 Hb_000367_290 Hb_000413_130--Hb_000367_290 Hb_002725_070 Hb_002725_070 Hb_000413_130--Hb_002725_070 Hb_029281_010 Hb_029281_010 Hb_000413_130--Hb_029281_010 Hb_000413_130--Hb_006091_030 Hb_002169_010 Hb_002169_010 Hb_002377_050--Hb_002169_010 Hb_000176_140 Hb_000176_140 Hb_002377_050--Hb_000176_140 Hb_002377_050--Hb_001776_080 Hb_001433_170 Hb_001433_170 Hb_002377_050--Hb_001433_170 Hb_127979_010 Hb_127979_010 Hb_002377_050--Hb_127979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.9089 29.0488 8.73405 14.7676 145.003 121.804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.878 38.3068 68.5519 18.573 9.31857

CAGE analysis