Hb_000161_040

Information

Type -
Description -
Location Contig161: 66547-75051
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23100g
description hypothetical protein
nr
ID XP_012066640.1
description PREDICTED: protein EI24 homolog [Jatropha curcas]
swissprot
ID Q5BPL5
description Protein EI24 homolog OS=Arabidopsis thaliana GN=At4g06676 PE=2 SV=1
trembl
ID B9N0B7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23100g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14415: 66589-71600 , PASA_asmbl_14417: 71744-74928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_040 0.0 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
2 Hb_003097_070 0.0733070445 - - glucose regulated repressor protein, putative [Ricinus communis]
3 Hb_002728_080 0.0769828655 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000116_450 0.0854813712 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
5 Hb_033286_010 0.0872718093 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
6 Hb_023313_030 0.0901900098 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000258_070 0.0914918913 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
8 Hb_002374_370 0.0920151332 - - protein with unknown function [Ricinus communis]
9 Hb_013738_020 0.0926708255 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_001009_320 0.0927408742 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
11 Hb_021419_030 0.0928463307 - - hypothetical protein glysoja_023295 [Glycine soja]
12 Hb_004109_230 0.0935883904 - - heat shock protein binding protein, putative [Ricinus communis]
13 Hb_000009_400 0.0936350172 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
14 Hb_000260_330 0.093744153 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
15 Hb_000120_170 0.0943435422 - - selenoprotein [Populus trichocarpa]
16 Hb_001189_090 0.0945235723 - - carbon catabolite repressor protein, putative [Ricinus communis]
17 Hb_001882_050 0.0963582757 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
18 Hb_000705_170 0.0963892996 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
19 Hb_004990_010 0.097384165 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
20 Hb_000340_530 0.0978959071 - - hypothetical protein VITISV_016664 [Vitis vinifera]

Gene co-expression network

sample Hb_000161_040 Hb_000161_040 Hb_003097_070 Hb_003097_070 Hb_000161_040--Hb_003097_070 Hb_002728_080 Hb_002728_080 Hb_000161_040--Hb_002728_080 Hb_000116_450 Hb_000116_450 Hb_000161_040--Hb_000116_450 Hb_033286_010 Hb_033286_010 Hb_000161_040--Hb_033286_010 Hb_023313_030 Hb_023313_030 Hb_000161_040--Hb_023313_030 Hb_000258_070 Hb_000258_070 Hb_000161_040--Hb_000258_070 Hb_003097_070--Hb_002728_080 Hb_012651_010 Hb_012651_010 Hb_003097_070--Hb_012651_010 Hb_000140_350 Hb_000140_350 Hb_003097_070--Hb_000140_350 Hb_010534_010 Hb_010534_010 Hb_003097_070--Hb_010534_010 Hb_003097_070--Hb_033286_010 Hb_002989_020 Hb_002989_020 Hb_002728_080--Hb_002989_020 Hb_007481_010 Hb_007481_010 Hb_002728_080--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_002728_080--Hb_005797_010 Hb_003683_020 Hb_003683_020 Hb_002728_080--Hb_003683_020 Hb_004990_010 Hb_004990_010 Hb_002728_080--Hb_004990_010 Hb_000046_500 Hb_000046_500 Hb_002728_080--Hb_000046_500 Hb_000340_530 Hb_000340_530 Hb_000116_450--Hb_000340_530 Hb_013738_020 Hb_013738_020 Hb_000116_450--Hb_013738_020 Hb_002374_370 Hb_002374_370 Hb_000116_450--Hb_002374_370 Hb_003938_090 Hb_003938_090 Hb_000116_450--Hb_003938_090 Hb_093458_040 Hb_093458_040 Hb_000116_450--Hb_093458_040 Hb_000116_450--Hb_000258_070 Hb_000146_040 Hb_000146_040 Hb_033286_010--Hb_000146_040 Hb_003671_010 Hb_003671_010 Hb_033286_010--Hb_003671_010 Hb_001009_320 Hb_001009_320 Hb_033286_010--Hb_001009_320 Hb_005946_210 Hb_005946_210 Hb_033286_010--Hb_005946_210 Hb_000522_170 Hb_000522_170 Hb_033286_010--Hb_000522_170 Hb_000006_010 Hb_000006_010 Hb_033286_010--Hb_000006_010 Hb_023313_030--Hb_002728_080 Hb_023313_030--Hb_005797_010 Hb_000215_300 Hb_000215_300 Hb_023313_030--Hb_000215_300 Hb_000313_220 Hb_000313_220 Hb_023313_030--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_023313_030--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_023313_030--Hb_002849_130 Hb_000441_090 Hb_000441_090 Hb_000258_070--Hb_000441_090 Hb_015807_050 Hb_015807_050 Hb_000258_070--Hb_015807_050 Hb_000258_070--Hb_002849_130 Hb_000258_070--Hb_000340_530 Hb_000258_070--Hb_000313_220 Hb_000347_430 Hb_000347_430 Hb_000258_070--Hb_000347_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.16167 7.8589 5.46649 12.4834 10.4008 5.40458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.62888 7.27342 5.25109 6.10327 5.95048

CAGE analysis