Hb_000161_050

Information

Type -
Description -
Location Contig161: 72252-78232
Sequence    

Annotation

kegg
ID rcu:RCOM_1374940
description hypothetical protein
nr
ID XP_002529007.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSN8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1374940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14416: 72514-72947 , PASA_asmbl_14418: 75375-78155 , PASA_asmbl_14419: 76617-76818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002781_020 0.0795977198 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
3 Hb_001153_080 0.0802523292 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
4 Hb_000212_260 0.0920452885 - - acyl-carrier-protein [Triadica sebifera]
5 Hb_011689_050 0.0981152591 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
6 Hb_010172_030 0.0983407284 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
7 Hb_009851_100 0.0994669648 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
8 Hb_001123_120 0.1016937793 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
9 Hb_000045_190 0.1040124309 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
10 Hb_002571_020 0.1041160534 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
11 Hb_001045_080 0.1054296232 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
12 Hb_002897_080 0.1061335398 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
13 Hb_003376_130 0.107259871 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
14 Hb_000634_050 0.1092632667 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
15 Hb_001437_220 0.1106186871 - - Transmembrane protein, putative [Ricinus communis]
16 Hb_000963_030 0.11065915 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
17 Hb_002835_320 0.1111573531 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_003680_070 0.1121200272 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
19 Hb_000193_200 0.1128392141 - - rotamase, putative [Ricinus communis]
20 Hb_000046_260 0.1130700233 - - acyl carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000161_050 Hb_000161_050 Hb_002781_020 Hb_002781_020 Hb_000161_050--Hb_002781_020 Hb_001153_080 Hb_001153_080 Hb_000161_050--Hb_001153_080 Hb_000212_260 Hb_000212_260 Hb_000161_050--Hb_000212_260 Hb_011689_050 Hb_011689_050 Hb_000161_050--Hb_011689_050 Hb_010172_030 Hb_010172_030 Hb_000161_050--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000161_050--Hb_009851_100 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_002781_020--Hb_010172_030 Hb_000362_210 Hb_000362_210 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_001153_080--Hb_000045_190 Hb_001341_130 Hb_001341_130 Hb_001153_080--Hb_001341_130 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_000188_130 Hb_000188_130 Hb_001153_080--Hb_000188_130 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_000212_260--Hb_010172_030 Hb_000212_260--Hb_009851_100 Hb_000963_030 Hb_000963_030 Hb_011689_050--Hb_000963_030 Hb_004958_050 Hb_004958_050 Hb_011689_050--Hb_004958_050 Hb_001616_020 Hb_001616_020 Hb_011689_050--Hb_001616_020 Hb_001123_120 Hb_001123_120 Hb_011689_050--Hb_001123_120 Hb_000144_110 Hb_000144_110 Hb_011689_050--Hb_000144_110 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_000312_090 Hb_000312_090 Hb_009851_100--Hb_000312_090 Hb_001045_080 Hb_001045_080 Hb_009851_100--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_009851_100--Hb_001269_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.7864 3.22291 5.44931 15.9484 27.7274 33.8246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.462 125.401 45.8521 20.9791 9.90692

CAGE analysis