Hb_000161_060

Information

Type -
Description -
Location Contig161: 79108-84547
Sequence    

Annotation

kegg
ID rcu:RCOM_1374720
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative
nr
ID XP_012066643.1
description PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
swissprot
ID Q94AH3
description Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 SV=1
trembl
ID A0A067L1S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00213 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable magnesium transporter nipa4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14421: 79290-84651
cDNA
(Sanger)
(ID:Location)		 027_A07.ab1: 82413-84560 , 032_A23.ab1: 82443-84560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_060 0.0 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
2 Hb_000629_120 0.0720484026 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
3 Hb_001205_150 0.0809773944 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
4 Hb_010174_020 0.0890335732 - - protein binding protein, putative [Ricinus communis]
5 Hb_000692_220 0.0905337276 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
6 Hb_000985_060 0.0921166726 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
7 Hb_092337_010 0.092517527 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
8 Hb_007009_010 0.0927765783 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
9 Hb_000749_220 0.0934748101 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
10 Hb_000023_090 0.095558742 - - mak, putative [Ricinus communis]
11 Hb_004079_030 0.0961375712 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
12 Hb_148113_010 0.0961764595 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
13 Hb_000479_190 0.0967185267 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002005_020 0.0982665306 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001390_130 0.0990155615 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
16 Hb_000477_060 0.0992401734 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
17 Hb_000138_110 0.1000884167 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
18 Hb_003502_090 0.1001777834 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_004696_080 0.1013356304 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
20 Hb_003697_040 0.1019322962 - - hypothetical protein B456_005G209600 [Gossypium raimondii]

Gene co-expression network

sample Hb_000161_060 Hb_000161_060 Hb_000629_120 Hb_000629_120 Hb_000161_060--Hb_000629_120 Hb_001205_150 Hb_001205_150 Hb_000161_060--Hb_001205_150 Hb_010174_020 Hb_010174_020 Hb_000161_060--Hb_010174_020 Hb_000692_220 Hb_000692_220 Hb_000161_060--Hb_000692_220 Hb_000985_060 Hb_000985_060 Hb_000161_060--Hb_000985_060 Hb_092337_010 Hb_092337_010 Hb_000161_060--Hb_092337_010 Hb_000138_110 Hb_000138_110 Hb_000629_120--Hb_000138_110 Hb_000125_100 Hb_000125_100 Hb_000629_120--Hb_000125_100 Hb_000629_120--Hb_092337_010 Hb_000567_120 Hb_000567_120 Hb_000629_120--Hb_000567_120 Hb_000629_120--Hb_001205_150 Hb_001205_150--Hb_000692_220 Hb_001205_150--Hb_010174_020 Hb_000479_190 Hb_000479_190 Hb_001205_150--Hb_000479_190 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_003502_090 Hb_003502_090 Hb_001205_150--Hb_003502_090 Hb_010174_020--Hb_000692_220 Hb_010174_020--Hb_000479_190 Hb_003671_020 Hb_003671_020 Hb_010174_020--Hb_003671_020 Hb_008300_010 Hb_008300_010 Hb_010174_020--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_010174_020--Hb_001461_010 Hb_000692_220--Hb_000479_190 Hb_000692_220--Hb_092337_010 Hb_002375_070 Hb_002375_070 Hb_000692_220--Hb_002375_070 Hb_003125_010 Hb_003125_010 Hb_000692_220--Hb_003125_010 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000985_060--Hb_000479_190 Hb_114310_080 Hb_114310_080 Hb_000985_060--Hb_114310_080 Hb_000363_360 Hb_000363_360 Hb_000985_060--Hb_000363_360 Hb_028515_010 Hb_028515_010 Hb_000985_060--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_000985_060--Hb_029388_030 Hb_004738_100 Hb_004738_100 Hb_092337_010--Hb_004738_100 Hb_001936_010 Hb_001936_010 Hb_092337_010--Hb_001936_010 Hb_003108_020 Hb_003108_020 Hb_092337_010--Hb_003108_020 Hb_004705_100 Hb_004705_100 Hb_092337_010--Hb_004705_100 Hb_092337_010--Hb_000125_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3961 8.74075 7.39568 32.8988 15.1418 19.6772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9025 32.1226 45.4584 15.4894 15.1464

CAGE analysis